Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01497 ATGGCGGCAGAGAGTGTAGCTGATTTACCCGTGAAGAGGCAGAGAGAAGACGAAGAAAATGGGGTCCCTGAGAATGCTTCTACCCTCTCAAATGACCCTCAACCTCAGGGTATATCAGCTGTTATTCCCGGCTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTATCAGAATGTTATGGTTTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACCCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTATCACGCCATTCTTCAATTGAAAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGATGTTTCCAAACAATTTTTCCCTGATATAGCAGTAGGTTTTGATGATCCACGTGTGACGCTTCATATTGGCGATGGAGTGGCATTTTTGAAGGCAGCTCCGGAAGGAACTTATGATGCAGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCTTTTTTTGAGTCGGTTGCAAGGGCTCTTCGACCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATTTGGCTCCATATGCATATCATTGAGGACATTGTTGCAAATTGTCGCCAGATATTCAAAGGCTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTTCTGTTGATTTCAAGCATCCAGTGAATCCTATAGATGAGAATGATAATCAGCAGTCAGCAAGACCATTGAAATTTTACAACCGTGAGATTCATACAGCAGCTTTCTGTTTGCCATCATTTGCTAAGAGGGCGATTGGTTCTAAAGCAACTTGA 1002 0.4361 MAAESVADLPVKRQREDEENGVPENASTLSNDPQPQGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSIEKIDICEIDKMVVDVSKQFFPDIAVGFDDPRVTLHIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDNQQSARPLKFYNREIHTAAFCLPSFAKRAIGSKAT. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01497 333 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Seca10g01497 333 FunFam Spermidine synthase 1 96 333 - -
Seca10g01497 333 Gene3D Vaccinia Virus protein VP39 96 333 IPR029063 -
Seca10g01497 333 PANTHER SPERMIDINE/SPERMINE SYNTHASE 36 330 IPR001045 GO:0003824
Seca10g01497 333 CDD AdoMet_MTases 121 232 - -
Seca10g01497 333 FunFam Spermidine synthase 1 36 95 - -
Seca10g01497 333 Pfam Spermidine synthase tetramerisation domain 44 98 IPR035246 -
Seca10g01497 333 Gene3D Spermidine synthase, tetramerisation domain 37 95 IPR037163 -
Seca10g01497 333 Hamap Polyamine aminopropyltransferase [speE]. 44 329 IPR001045 GO:0003824
Seca10g01497 333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 328 IPR029063 -
Seca10g01497 333 NCBIfam fused MFS/spermidine synthase 103 284 - -
Seca10g01497 333 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g01497 333 NCBIfam spermidine synthase 45 323 IPR001045 GO:0003824
Seca10g01497 333 Pfam Spermine/spermidine synthase domain 101 288 - -
Seca10g01497 333 PIRSF Spermidine_synth 34 333 IPR030668 GO:0006595
Seca10g01497 333 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 122 135 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01497 Seca-Chr10 16183954 16188289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01497 K00797 - gmx:100792107 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01497 10 16183954 16188289 Seca10g01497 10 16183954 16188289 ECH
Seca10g01497 10 16183954 16188289 Seca12g03717 12 95042234 95046932 PCT