Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02925 ATGGCAGACATAGTGAAGCAGCTGTTGGCAAAGCCGATCCAATTAGCAGACCAAGTGAGCAAAGCAGCAGAAGAAGGAAGCGCGTCGTTCAAGCAAGAATGCTTAGAGCTGAAATCCAAATCGGAGAAGCTAGCTGGGCTTCTCCGTCAGGCAGCGAGAGCGAGTTCCGACCTTTACGAGCGTCCGACACGTCGAATCATCGCCGACACCGAACAAGTCCTAGAAAAGGCCCTAACGTTGGTGCTCAAGTGCCGCGCTAACGGCCTCATGAAGCGCGTGTTCAGCATCGTCCCTACAGCCGCGTTTCGCAAGATGTCCTCGCAGCTTGAGAATTCCATCGGTGATGTGTCGTGGCTCCTCCGTGTCTCCGCTCCGGCGGAGGAGCGCGGCGATGAGTATTTGGGCCTTCCTCCTATTGCCGCCAACGAGCCCATTTTGGGTCTCATTTGGGAACAAATTGCGACCCTTCACACGGGCTCGCTCGATGACCGATCTGATGCGGCGGCTTCGCTCGTGTCCCTCGCACGTGACAACGACCGTTACGGGAAATTGATCATAGAGGAAGGTGGGGTTGGACCTTTGTTGAAGCTGATCAAGGAAGGTAAGAAGGAAGGTCAAGAGAATGCTGCAAGCGCAATTGGGCTTCTGGGCCGTGACCCTGAGAGCGTGGAGCATATGATCCATGCTGGTGTTTGCTCTGTTTTTGCTAAAATCCTTAAAGAAGGTCCCATGAAAGTGCAAGCTGTTGTTGCCTGGGCAGTGTCTGAATTGGCCTCCAAGTACCCCAAATGCCAAGATCTTTTTGCTCAGCATAATATTGTTCGCTTGCTTGTGAGTCATCTTGCCTTTGAAACTGTTCAAGAGCATAGTAAATATGCCATTGTTAGTAACAAGCCCACATCAATCCATGCTGTTGTGATGGCGAGTAATAATTCTAATGCCAATAATGTGAAGAAGGAGAATGAAGATGAGGATAAACAGATGCAGAGTCGGATTCAGCATCCTTTGGCTGATAAGTCCACAAATCAGATGCTTAAAGTGGTCACCAGTACCATGGCAATGCATGCTGCCAACAAGCAGCAGTCCAATCAAGGGAATGAAGCAAGTCAGAACCAGAACACCCAGGCCAGTCAACCCAACAGCAATGGAGTTAGTAATGGTAAGCAAAACCATCAGATTCACCAGCAAAGCTATTCCTATTCTGGGATTAACATGAAGGGAAGGGAACTTGAAGACCCTGAGAGTAAGGCTAACATGAAAGCAATGGCAGCAAGGGCCCTAAGGTACCTAGCCAAGGGTAACTCAGCCATTTGTCGTAGCATCACAGAATCAAGGGCTCTGTTGTGCTTTGCCATTCTCCTTGAAAAAGGACCTGAAGATGTGAAGTACAATTCTGCAATGGCAGTGAAGGAGATTACAGCAGTGGCAGAGAAAGATGCAGAATTAAGAAGATCAGCATTCAAGCCTAATTCTCCTGCTTGCAAAGCAGTTGTTGATCAAGTGCTCAAAATCATCGAGGAAGAAGATACAAAACTATTAATTCCTTGCATCAAGGCTATTGGGAATTTGGCAAGGACATTCAGAGCAACAGAGACAAGGATAATTGGTCCCTTGGTTAGACTTCTTGATGAAAGAGAGAATGAAGTATCCAGGGAAGCAGCAATTTCCCTCACAAAGTTTGCCTGCTTAGAAAACTACCTCCACCTTGATCACTCCAAGGCAATTATAAGTGCAGGTGGTGCAAAACACTTGGTTCAGCTTGTGTATCTTGGAGAACAGACAGTTCAAAGTTCAGCCTTAGTTCTGCTCTCCTATATTGCATTGCATGTGCCAGACAGTGAAGAACTTGCTCAGGCTGAGGTGCTTGGAGTGCTTGAATGGGCATACAAGCAACCTAACATGACACAGGATGAAAACCTTGAGGCATTGTTGCAAGAGTCCAAGAGTAGGCTGGAGCTTTACCAGTCTAGAGGTTCAAGAGGATTCCAAAAATTACATCAATAG 2004 0.4755 MADIVKQLLAKPIQLADQVSKAAEEGSASFKQECLELKSKSEKLAGLLRQAARASSDLYERPTRRIIADTEQVLEKALTLVLKCRANGLMKRVFSIVPTAAFRKMSSQLENSIGDVSWLLRVSAPAEERGDEYLGLPPIAANEPILGLIWEQIATLHTGSLDDRSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLIKEGKKEGQENAASAIGLLGRDPESVEHMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELASKYPKCQDLFAQHNIVRLLVSHLAFETVQEHSKYAIVSNKPTSIHAVVMASNNSNANNVKKENEDEDKQMQSRIQHPLADKSTNQMLKVVTSTMAMHAANKQQSNQGNEASQNQNTQASQPNSNGVSNGKQNHQIHQQSYSYSGINMKGRELEDPESKANMKAMAARALRYLAKGNSAICRSITESRALLCFAILLEKGPEDVKYNSAMAVKEITAVAEKDAELRRSAFKPNSPACKAVVDQVLKIIEEEDTKLLIPCIKAIGNLARTFRATETRIIGPLVRLLDERENEVSREAAISLTKFACLENYLHLDHSKAIISAGGAKHLVQLVYLGEQTVQSSALVLLSYIALHVPDSEELAQAEVLGVLEWAYKQPNMTQDENLEALLQESKSRLELYQSRGSRGFQKLHQ. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02925 667 Gene3D - 150 327 IPR011989 -
Seca12g02925 667 MobiDBLite consensus disorder prediction 317 332 - -
Seca12g02925 667 Pfam Armadillo/beta-catenin-like repeat 184 215 IPR000225 GO:0005515
Seca12g02925 667 Coils Coil 637 657 - -
Seca12g02925 667 Gene3D - 406 649 IPR011989 -
Seca12g02925 667 Gene3D - 3 122 IPR036537 GO:0007166
Seca12g02925 667 FunFam Armadillo repeat only 2 151 321 - -
Seca12g02925 667 SMART arm_5 434 474 IPR000225 GO:0005515
Seca12g02925 667 SMART arm_5 568 608 IPR000225 GO:0005515
Seca12g02925 667 SMART arm_5 177 218 IPR000225 GO:0005515
Seca12g02925 667 SMART arm_5 219 259 IPR000225 GO:0005515
Seca12g02925 667 SMART arm_5 490 525 IPR000225 GO:0005515
Seca12g02925 667 PANTHER ARMADILLO REPEAT ONLY 4 1 659 - -
Seca12g02925 667 MobiDBLite consensus disorder prediction 356 391 - -
Seca12g02925 667 SUPERFAMILY ARM repeat 154 642 IPR016024 -
Seca12g02925 667 MobiDBLite consensus disorder prediction 310 341 - -
Seca12g02925 667 FunFam Armadillo repeat only 4 2 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02925 Seca-Chr12 55336793 55338796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02925 - - gmx:100794693 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02925 12 55336793 55338796 Seca12g02925 12 55336793 55338796 ECH
Seca10g00986 10 9472838 9474847 Seca12g02925 12 55336793 55338796 PCT