Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00986 ATGGGTGACATAGTGAAGCAAATATTGGCAAAGCCGATCCAGCTGGCAGACCTAGTGACAAAGGCAGCAGATGAGGCAAGCTCCTTCAAGCAGGAATGCGGCGAGCTTAAGTCCAAAACGGAAAAGCTCGCGGCGCTTCTCCGCCAAGCGGCGAGGGCGAGCTCCGACCTCTACGAGCGTCCGACACGGCGGATCATCGAGGAAACCGAACAGGTCCTCGAAAAGGCCCTTTCTTTGGTCCTCAAATGCCGCGCCAACGGCCTCATGAAGCGCGTCTTCACCATCATCCCCGCCGCCGCGTTCCGCAAGATGTCGTCCCACCTTGAGAACTCCATCGGAGACGTCTCCTGGCTCCTCCGTGTCTCCGCCCCCGCCGATGACCGCGGCGGCGAGTACCTCGGCCTCCCTCCGATCGCCGCCAACGAGCCCATCCTCTGTCTCATATGGGAGCAGATCGCCATCCTCTACACTGGCTCACCGGAGGATCGCTCCGACGCCGCCGCCTCCCTCGTGTCCCTCGCCAGCGGTAGTGACCGTTACGGGAAACTCATCATCGAAGAAGGCGGGGTGGGTCCCTTGTTGAAGCTGATCAAGGAGGGGAAGATGGAAGGGCAAGAGAATGCTGCCAAAGCCATTGGTCTCCTCGGGCGTGACGCTGAAAGCGTTGAGCACATGATCCACGTGGGTGTGTGCTCAGTGTTTGCGAAAATCCTCAAAGAAGGTCACATGAAAGTGCAAGCCGTTGTCGCTTGGGCTGTGTCTGAACTTGCTGCTAATTACCCCAAGTGTCAGGACCTTTTCGCTCAGCACAATATTATAAGATTGCTTGTAGGCCACCTTGCATTTGAAACTGTTGAAGAGCATAGTAAGTATGCTATTGTCAGCATGAAACCCACATCAATTCACGCTGTTGTTATGGCTAGTAACAATTCTAATCATGCGAATAGTGCGAAGAAGGCAAATGAAAATGATGATCGTGACAACAAGCAAGCACAGAGCTTGAGTCGGATACAGCATCCCTTGGGTGAAAGACCACGAAATCTGCATAGAGTGATCACAAGTACCATGGCAATGCATGCTGCCAACAAGCAGCAGGAAAATGAAGCAAATCAAAATCAGAACAGTCAACCCAATGGCAATGGACTTGGTAATGATGGTAAGCAAGGACATCAACTCCATCATAATCACCAGCGTAACTATTCACATTCGGGAATTAACATGAAGGGGAGGGATCTTGAAGACCCTGAGACTAAGGCCAAAATGAAGGAAATGGCAGCGAGAGCCCTCTGGCAATTGGCCAAGGGTAATGTGCCAATTTGTCGTAGCATCACAGAATCAAGGGCCCTGTTGTGCTTTGCCGTTCTCCTTGAGAAAGGACCAGAGGCTGTACAGTACAATTCTGCTATGGCAGTGATGGAGATTACTGCAGTGGCAGAGAAAGATGCTGATTTGAGGAAATCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCAGTTGTTGATCAAGTGCTTAAGATAATTGAAAGAGCTGATTCAGACCTCTTAATTCCTTGCATCAAGGCGATTGGGAATTTGGCAAGGACATTTCGAGCTACAGAGACAAGGATGATTGGTCCCTTGGTAAAACTTCTTGATGAAAGAGAGGCAGAGGTAACCAGGGAGGCATCAATAGCTCTCACAAAATTTGCCTGCACTGAAAACTACCTTCACCTTGATCACTCCAAGGCAATTATAAGAGCAGGTGGGGCAAAACACTTGATTCAGCTTGTGTATTTTGGAGAACAGATGGTTCAGATTCCGGCATTAGTTCTGCTCTCCTACATTGCATTGCATGTGCCAGATAGTGAAGAACTTGCTAAGGCTGAGGTGCTTGGAGTGCTTGAATGGGCCTCCAAGCAATCTTCCATGACACATGATGAAAACCTTGAGGAATTGTTGCAAGAATCCAAGAGTAGGTTGGAGCTTTACCAGTCTAGAGGTTCAAGAGGATTTCATAAATTACATCAATAG 2010 0.4985 MGDIVKQILAKPIQLADLVTKAADEASSFKQECGELKSKTEKLAALLRQAARASSDLYERPTRRIIEETEQVLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSSHLENSIGDVSWLLRVSAPADDRGGEYLGLPPIAANEPILCLIWEQIAILYTGSPEDRSDAAASLVSLASGSDRYGKLIIEEGGVGPLLKLIKEGKMEGQENAAKAIGLLGRDAESVEHMIHVGVCSVFAKILKEGHMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKPTSIHAVVMASNNSNHANSAKKANENDDRDNKQAQSLSRIQHPLGERPRNLHRVITSTMAMHAANKQQENEANQNQNSQPNGNGLGNDGKQGHQLHHNHQRNYSHSGINMKGRDLEDPETKAKMKEMAARALWQLAKGNVPICRSITESRALLCFAVLLEKGPEAVQYNSAMAVMEITAVAEKDADLRKSAFKPNSPACKAVVDQVLKIIERADSDLLIPCIKAIGNLARTFRATETRMIGPLVKLLDEREAEVTREASIALTKFACTENYLHLDHSKAIIRAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELAKAEVLGVLEWASKQSSMTHDENLEELLQESKSRLELYQSRGSRGFHKLHQ. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00986 669 Gene3D - 3 121 IPR036537 GO:0007166
Seca10g00986 669 FunFam Armadillo repeat only 2 150 319 - -
Seca10g00986 669 MobiDBLite consensus disorder prediction 312 346 - -
Seca10g00986 669 SUPERFAMILY ARM repeat 153 640 IPR016024 -
Seca10g00986 669 Gene3D - 406 650 IPR011989 -
Seca10g00986 669 FunFam Armadillo repeat only 4 2 121 - -
Seca10g00986 669 Coils Coil 36 56 - -
Seca10g00986 669 FunFam Armadillo repeat only 2 396 653 - -
Seca10g00986 669 MobiDBLite consensus disorder prediction 363 415 - -
Seca10g00986 669 Gene3D - 149 337 IPR011989 -
Seca10g00986 669 Coils Coil 639 659 - -
Seca10g00986 669 MobiDBLite consensus disorder prediction 318 332 - -
Seca10g00986 669 MobiDBLite consensus disorder prediction 363 385 - -
Seca10g00986 669 PANTHER ARMADILLO REPEAT ONLY 4 1 661 - -
Seca10g00986 669 SMART arm_5 218 258 IPR000225 GO:0005515
Seca10g00986 669 SMART arm_5 436 476 IPR000225 GO:0005515
Seca10g00986 669 SMART arm_5 570 610 IPR000225 GO:0005515
Seca10g00986 669 SMART arm_5 492 527 IPR000225 GO:0005515
Seca10g00986 669 SMART arm_5 177 217 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00986 Seca-Chr10 9472838 9474847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00986 - - mtr:11433980 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00986 10 9472838 9474847 Seca10g00986 10 9472838 9474847 ECH
Seca10g00986 10 9472838 9474847 Seca12g02925 12 55336793 55338796 PCT