Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02381 ATGGATGCGGAGGCTGTAACCCCGGCGGCCGCCATATCGCGGTGGAAGTTCGCTTTGTCGCAGCGCTTCCAGCACCTTCTCGACAAAACGACGCCGCACGTGGGAAAGCGCTGGATCGGGTGCCTTGTGGTGGCGTTGGTCTACGTTATCCGCGTCTACTTCGTGCAAGGCTTCTACATCGTTTCCTATGGTCTCGGCATTTACATCCTCAACCTTCTTATTGGCTTCCTCTCCCCTCAGGTGGATCCTGAGATCCACGATGCCGATGGCCCCACCCTCCCCACCACCGGTTCTGATGAGTTCCGCCCCTTCGTTCGCCGCCTCCCTGAGTTCAAGTTCTGTTCTCAATTTTCTTTTGTGGACAGGTACTCGATCACAAAGGCGTTTTGCATTGCATTTGTGATGACATTCTTTAGTGCCTTTGATGTTCCAGTGTTCTGGCCAATACTCCTCTTCTACTGGGTGGTCCTATTCTCGCTTACTATGAGGAGACAGATATCTCACATGATCAAATACAAATATGTACCATTCTCGTTTGGAAAGCAGCGCTATGATGGAAAGAGAACATCAGCAGAAAGCACAGGCCTATCAGAGGACTGA 600 0.515 MDAEAVTPAAAISRWKFALSQRFQHLLDKTTPHVGKRWIGCLVVALVYVIRVYFVQGFYIVSYGLGIYILNLLIGFLSPQVDPEIHDADGPTLPTTGSDEFRPFVRRLPEFKFCSQFSFVDRYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYVPFSFGKQRYDGKRTSAESTGLSED. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02381 199 PIRSF AtER_Rer1p 1 195 IPR004932 GO:0016020
Seca12g02381 199 Pfam Rer1 family 17 184 IPR004932 GO:0016020
Seca12g02381 199 PANTHER PROTEIN RER1 7 190 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02381 Seca-Chr12 34012681 34016145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02381 23 192 Miscellaneous Gene Families AT4G39220 71.930 3.70e-89 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02381 - - gmx:100805147 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02381 12 34012681 34016145 Seca12g02381 12 34012681 34016145 ECH
Seca4g00202 4 3200369 3202419 Seca12g02381 12 34012681 34016145 ECH
Seca12g02381 12 34012681 34016145 Seca12g02381 12 34012681 34016145 PCT