Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01961 ATGAGCACTGGGGACCTCCTCGACATCGAACCTCTCGAACTCAAGTTCCCCTTTGAGCTGAAGAAGCAGATCTCGTGCTCTCTTCAATTGTCAAATAAGACCGATAGCTATGTAGCTTTCAAGTTTGACCGTAACGGTAAGTATTCTCGTGAAGTTAACATGATTTCCACGGTGAAAACAACCAATCCAAAGAAGTATTGTGTTCGTCCAAACACTGGAATTGTCATGCCCCGATCTACATGTGATGTTATGGTTACTATGCAAGCACAAAAAGAATCTCCACCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAGTTAATGATGGTGCCTCCCCAAAGGAAATCTCTGCAGAAATGTTCAACAAGGAGGCAGGGCATGTCGTTGAGGAGTGCAAATTGAGAGTGGTGTATGTCTCTCCACCTCAACCACCATCTCCAGTCCCAGAAGGTTCTGAGGAAGGGTCATCACCTAGAGGTTCTGTTTCAGAAAATGGAAATACCAATGGTTCTGACTTCTCTCAAGTGGGTTCTTAA 546 0.4377 MSTGDLLDIEPLELKFPFELKKQISCSLQLSNKTDSYVAFKFDRNGKYSREVNMISTVKTTNPKKYCVRPNTGIVMPRSTCDVMVTMQAQKESPPDMQCKDKFLLQSVKVNDGASPKEISAEMFNKEAGHVVEECKLRVVYVSPPQPPSPVPEGSEEGSSPRGSVSENGNTNGSDFSQVGS. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01961 181 PIRSF VAMP_assoc_prot 52 179 IPR016763 GO:0005789
Seca12g01961 181 PIRSF VAMP_assoc_prot 1 43 IPR016763 GO:0005789
Seca12g01961 181 MobiDBLite consensus disorder prediction 159 181 - -
Seca12g01961 181 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 167 IPR016763 GO:0005789
Seca12g01961 181 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 142 IPR000535 -
Seca12g01961 181 Pfam MSP (Major sperm protein) domain 58 127 IPR000535 -
Seca12g01961 181 Gene3D Immunoglobulins 2 146 IPR013783 -
Seca12g01961 181 MobiDBLite consensus disorder prediction 142 181 - -
Seca12g01961 181 FunFam Vesicle-associated protein 1-1 46 145 - -
Seca12g01961 181 SUPERFAMILY PapD-like 2 157 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01961 Seca-Chr12 23541197 23542508 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01961 - - gmx:100527687 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01961 12 23541197 23542508 Seca12g01961 12 23541197 23542508 ECH
Seca12g01961 12 23541197 23542508 Seca12g01946 12 23377117 23379335 PCT