Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01946 ATGTACATCAGTGGTGCATCTCTAATTATTGAGCTAAATTGTCTCTTAATGTGCCTGAAGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTAACAGTTGGACAGTTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGCGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAAGATGGGTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTTGGGGATCTGATTTCCCACTAG 336 0.3958 MYISGASLIIELNCLLMCLKVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISH. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01946 111 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 20 106 IPR004241 -
Seca12g01946 111 Pfam Autophagy protein Atg8 ubiquitin like 20 106 IPR004241 -
Seca12g01946 111 SUPERFAMILY Ubiquitin-like 19 106 IPR029071 -
Seca12g01946 111 Gene3D - 16 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01946 Seca-Chr12 23377117 23379335 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01946 K08341 - gmx:100818620 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01946 12 23377117 23379335 Seca12g01946 12 23377117 23379335 ECH
Seca12g01946 12 23377117 23379335 Seca12g01946 12 23377117 23379335 PCT
Seca12g01961 12 23541197 23542508 Seca12g01946 12 23377117 23379335 PCT