Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01879 ATGGAGTGGTCATCATGTACGGATGAGTATGAGAAGCTTGTGATTCGCATGAGCACCCCTAGGGTTGTCATTGACAATGCCGTTTGCTCCACTGCGACTATAGTCAAGTTTGATAGCGCCAGAAAGCATGGGATTCTTTTGGAAGCCGTACAAGTGCTCACTGATCTGGACCTTTCTATTAAGAAGGCCTATGTTTCCTCTGATGGCAGGTGGTTCATGGATGTTTTCCATGTTACGGATCAAAGCGGAAACAAGCTAACAGATGAGAGTGTTTTAAGATATATTGAACAGTCACTTGAGAGCATTCATAACGGGAGATCCAATCACAAAAACGGTCTCACTGCCTTGGAATTAACTGGAACAGATCGTGTTGGTCTTCTTTCAGAGGTGTTTGCTGTACTGGCAGACCTGCAATGCGACGTGGTGGATGCTAAGTTTTGGACTCACAATGGCCGGATTGCCTCCTTAATCTATGTAAAAGACTGCGATTCTGGAACCCCAATTGAGGACTCCCAGAAATTTAATAGGCTTGAAGCACGTTTAAGAAATGTTTTAAAGGGAGACAATGACATTAGGAGTGCAAAAACTTCCATTTCTAATGCTGTCATTCACCCTGAAAGAAGGCTCCACCAAATGATGTTTGTTGACCGTGATTACCAGAGGAATCCCATTTTCAAGTTCACTTCTGATACCCCATTAGTTACCGTCCAGAATTGGGCAGAAAGGGGTTATTCAGTTGTTAATATTCAATGCAAGGATCGAATCAAGCTCTTGTTTGATGTTGTATGCAATTTGACAGACATGGAATATGTTGTATTCCACGCAACTATTCACACAGCAATTGACCAAGCGTACCTGGTAGAGTTTTATATCAGACATAAGGATGGCACCCCAATTAGTTCAGAACCAGAACGTCATCGGGTGATTCAATGCTTACAAGCTGCAGTGGAGAGAAGGGCATGTGAGGGTGTCAGGCTAGAGTTATGCACGGAAGATAGGCAGGGGCTTCTAGCAGAGGTGATGAGAACGTTCCGAGAGAATGGGCTGAATGTGACAAGGGCTGAGATATCTACTACAGGGGACATGGCTGCAAATGTTTTTTATGTAACGGATGCTATTGGATACCCAGCTGACCCAAAAATCATCGAATCTGTTAGGCAGAAAATTGGGTTAAGCAATTTAAAAGTGAAGGAATTGCCATTCGTGTGTCATCAGAAGGCAGAGAGGGAAGATCAACCGGTTGGAGTTGGTGGGGCAGTGTTGTTGTCTCTGGGGAGCCTCGTGAGAAGGAATCTGTATAATTTGGGTTTGATCAAATCTTGTTCTTAA 1329 0.4379 MEWSSCTDEYEKLVIRMSTPRVVIDNAVCSTATIVKFDSARKHGILLEAVQVLTDLDLSIKKAYVSSDGRWFMDVFHVTDQSGNKLTDESVLRYIEQSLESIHNGRSNHKNGLTALELTGTDRVGLLSEVFAVLADLQCDVVDAKFWTHNGRIASLIYVKDCDSGTPIEDSQKFNRLEARLRNVLKGDNDIRSAKTSISNAVIHPERRLHQMMFVDRDYQRNPIFKFTSDTPLVTVQNWAERGYSVVNIQCKDRIKLLFDVVCNLTDMEYVVFHATIHTAIDQAYLVEFYIRHKDGTPISSEPERHRVIQCLQAAVERRACEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTTGDMAANVFYVTDAIGYPADPKIIESVRQKIGLSNLKVKELPFVCHQKAEREDQPVGVGGAVLLSLGSLVRRNLYNLGLIKSCS. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01879 442 ProSiteProfiles ACT domain profile. 325 401 IPR002912 -
Seca12g01879 442 ProSiteProfiles ACT domain profile. 34 109 IPR002912 -
Seca12g01879 442 ProSiteProfiles ACT domain profile. 115 199 IPR002912 -
Seca12g01879 442 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 398 IPR040217 -
Seca12g01879 442 SUPERFAMILY ACT-like 111 185 IPR045865 -
Seca12g01879 442 SUPERFAMILY ACT-like 29 102 IPR045865 -
Seca12g01879 442 Pfam ACT domain 118 159 - -
Seca12g01879 442 CDD ACT_ACR_4 323 394 - -
Seca12g01879 442 Gene3D - 113 188 - -
Seca12g01879 442 Gene3D - 323 391 - -
Seca12g01879 442 SUPERFAMILY ACT-like 322 393 IPR045865 -
Seca12g01879 442 CDD ACT_ACR_2 114 187 - -
Seca12g01879 442 Pfam ACT domain 326 376 IPR002912 -
Seca12g01879 442 CDD ACT_ACR_1 32 103 - -
Seca12g01879 442 CDD ACT_ACR_3 244 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01879 Seca-Chr12 21802081 21805774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01879 - - gmx:100794729 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01879 12 21802081 21805774 Seca12g01879 12 21802081 21805774 ECH
Seca2g00268 2 3788381 3791670 Seca12g01879 12 21802081 21805774 ECH