Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01838 ATGGACGGTTCATCCGGTGATTCTAGTCACCTGAATCTACCACCTCCCTCCGCCATGCCTCCTCCACCTTCCATCTCGCCGGAAAGTCTCCGCCACGTGGACCGCATGATTAACTCCAATCACTACAAATCACCTTCCAGAACAATCTACTCCGACAGGTTCATTCCCAGCAGATCTGCTTCCAAATTCGCTCTCTTCGATATCTCCACTCCTCCTGAGGGCCGTGACGACAGTTCCAGCGCCTACACCACCCTCCTCCGTACCGCCTTGTTCGGACCAGATGCCGCCGGTGTTGTTCCTCCGATCACGCCGGAGAAGAGGTCCTCGCCGGCGATGACCTTGCCGAGCCGCAATATTTTCCGGTACAAGACCGAGACTAGGCAGTCCATGCACTCGCTTTCCCCGTTTATGTGCGACGATGCGGTTCCCGGCGTCAATCACAGCCCTGTCAAGGCTCCGAGGAAGGTTCCGCGATCGCCTTATAAGGTTCTGGATGCACCTGCGCTGCAAGACGATTTTTATCTGAATCTTGTGGATTGGTCTTCGCACAATGTGTTGGCTGTGGGTCTGGGTAACTGTGTTTACCTCTGGAATGCTTGTAGCAGCAAGGTAACTAAATTATGTGATTTGGGGATTGATGACTGCGTTTGTTCAGTTGGCTGGGCTCAACGTGGTACACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCAAGATGCAAGAAGATAAGATCTATGGAGGGTCATCGTTTACGTGTTGGAGCCTTGGCCTGGAGCTCATCTCTTTTATCTTCAGGTGGCCGGGATAAGAATATTTATCAACGAGATATACGTGCACAAGAAGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACCCAGCCTGTCCTGAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCCCATCTTCATGGACTTCTTGCATCTGGTGGAGGAACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCTCACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCCAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACTATGTCAAAGTTGGCCACTCTCACGGGCCATAGTTATAGAGTTCTTTATCTTGCCATCTCTCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCCCCTAAATCACAGAACACTGACAGTGAAATCGGAGCATCATCTCTTGGAAGAACTATTATTAGGTGA 1440 0.4833 MDGSSGDSSHLNLPPPSAMPPPPSISPESLRHVDRMINSNHYKSPSRTIYSDRFIPSRSASKFALFDISTPPEGRDDSSSAYTTLLRTALFGPDAAGVVPPITPEKRSSPAMTLPSRNIFRYKTETRQSMHSLSPFMCDDAVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHSYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01838 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 455 IPR001680 GO:0005515
Seca12g01838 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Seca12g01838 479 Gene3D - 150 459 IPR015943 GO:0005515
Seca12g01838 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 250 IPR001680 GO:0005515
Seca12g01838 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 455 - -
Seca12g01838 479 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 39 474 IPR033010 GO:0010997|GO:0097027|GO:1904668
Seca12g01838 479 SUPERFAMILY WD40 repeat-like 161 461 IPR036322 GO:0005515
Seca12g01838 479 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g01838 479 Pfam WD domain, G-beta repeat 329 369 IPR001680 GO:0005515
Seca12g01838 479 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Seca12g01838 479 Pfam WD domain, G-beta repeat 418 454 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 157 198 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 244 281 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 285 324 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 327 369 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 201 241 IPR001680 GO:0005515
Seca12g01838 479 SMART WD40_4 415 454 IPR001680 GO:0005515
Seca12g01838 479 FunFam FIZZY-related 2 isoform 1 157 457 - -
Seca12g01838 479 Pfam Anaphase-promoting complex subunit 4 WD40 domain 211 265 IPR024977 -
Seca12g01838 479 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Seca12g01838 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01838 Seca-Chr12 21089966 21097394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01838 228 457 Miscellaneous Gene Families AT5G08390 21.030 7.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01838 K03364 - gmx:100780928 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01838 12 21089966 21097394 Seca12g01838 12 21089966 21097394 ECH
Seca10g00395 10 3469871 3475711 Seca12g01838 12 21089966 21097394 PCT