Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00395 ATGGACGATTCATTGAGCGGTACTCCTCCTCCTTCTCTTCCTGCATCTGAGCATGTGGACCGCATGATAAACTCCAAGCACTACAAGTCACCTTCCAGAACAATCTACTCCGATAGGTTCATACCAAGCAGATCCGCTTCCAAATTCGTTCTCTTTGATTTAATATCACCATCACATTCAGACGATAATTCCACTGCCTACAACACCCTTTTGCGCTCTGCATTATTCGGACCCGATGCTCCTGTTACCCCTGACAAACGCACCCCAAATATATTCCGTTACAAAACGGAGACTCGCCAGTCCATGCACTCTCTCTCCCCTTCCCCCTTTACATTCCATGACGACGTGCTTCCTGGCTCTGGCCCCAATCACATCCCTGTTAAGCCTCCTCGCAAGGTTCCCCCTTCACCTTTTAAGGTTCTTGATGCTCCGGCTCTGCAAGACGATTTTTATCTGAATCTTGTGGATTGGTCCTCCCACAATGTCTTGGCTGTGGCTCTGGGTAACTGTGTTTATTTATGGAATGCTTGTAGCAGCAAGGTGACTAAATTATGTGACTTGGGGATTGACGACTGCGTTTGTTCCGTTGGCTGGGCTCAGCGTGGTACACACCTTGCTGTTGGAGCTAGCAATGGTAAAGTCCAGATTTGGGATGCATCTCAATGCAAGATGATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTCTATCTTCTGGTGGCCGAGATAAAAACATTTATCAACGAGATATACGTGCACAGGGAGACTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTCTGTGGACTGAAGTGGTCTTATGATAACCGCGAGTTAGCATCTGGAGGAAATGACAATAGATTGCTTGTTTGGAATCAGCACTCAACCCAGCCCGTCCTAAAGTACTGTGAGCATACAGCAGCTGTTAAAGCCATTGCATGGTCTCCTCATGTTCATGGACTTCTTGCATCAGGAGGAGGAACTGCAGATCGATGTATTCGATTCTGGAATACAACCACAAACTCACACTTAAGTTGCATAGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTCAATGAACTGGTAAGCACACATGGCTACTCCCAGAACCAGATAATAGTTTGGAGATACCCCACCATGTCAAAGTTAGCAACTCTTACAGGCCATACTTATAGAGTTCTTTATCTTGCCGTCTCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAATGTATTCCCTTCCCGGAAATCTCAGAGTACTGAAAGCGAAATTGGAGCATCATCCCTTGGAAGAACTATTATTAGATGA 1371 0.4602 MDDSLSGTPPPSLPASEHVDRMINSKHYKSPSRTIYSDRFIPSRSASKFVLFDLISPSHSDDNSTAYNTLLRSALFGPDAPVTPDKRTPNIFRYKTETRQSMHSLSPSPFTFHDDVLPGSGPNHIPVKPPRKVPPSPFKVLDAPALQDDFYLNLVDWSSHNVLAVALGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGASNGKVQIWDASQCKMIRTMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQGDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTQPVLKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSRKSQSTESEIGASSLGRTIIR. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00395 456 FunFam FIZZY-related 2 isoform 1 134 434 - -
Seca10g00395 456 SMART WD40_4 134 175 IPR001680 GO:0005515
Seca10g00395 456 SMART WD40_4 392 431 IPR001680 GO:0005515
Seca10g00395 456 SMART WD40_4 304 346 IPR001680 GO:0005515
Seca10g00395 456 SMART WD40_4 221 258 IPR001680 GO:0005515
Seca10g00395 456 SMART WD40_4 178 218 IPR001680 GO:0005515
Seca10g00395 456 SMART WD40_4 262 301 IPR001680 GO:0005515
Seca10g00395 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 227 IPR001680 GO:0005515
Seca10g00395 456 Gene3D - 127 435 IPR015943 GO:0005515
Seca10g00395 456 SUPERFAMILY WD40 repeat-like 135 442 IPR036322 GO:0005515
Seca10g00395 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Seca10g00395 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Seca10g00395 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Seca10g00395 456 Pfam Anaphase-promoting complex subunit 4 WD40 domain 188 242 IPR024977 -
Seca10g00395 456 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 26 451 IPR033010 GO:0010997|GO:0097027|GO:1904668
Seca10g00395 456 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Seca10g00395 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Seca10g00395 456 Pfam WD domain, G-beta repeat 306 346 IPR001680 GO:0005515
Seca10g00395 456 Pfam WD domain, G-beta repeat 265 301 IPR001680 GO:0005515
Seca10g00395 456 Pfam WD domain, G-beta repeat 395 431 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00395 Seca-Chr10 3469871 3475711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00395 286 432 Miscellaneous Gene Families AT5G08390 22.449 7.06e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00395 K03364 - gmx:100780928 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00395 10 3469871 3475711 Seca10g00395 10 3469871 3475711 ECH
Seca10g00395 10 3469871 3475711 Seca12g01838 12 21089966 21097394 PCT