Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00388 ATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCCCTTCTTGAGAAGTATGAGATTGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGAAATATGGAAACACCGACATTGAGGGTGTTGATTCCACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTTAATTGTGTTAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCCATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGTCTCATGCTTATGATTTTTACAAACCTAATCTTGCTAGTGAATATCCGGTGGTCGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAACATTTCAGTCACAAATATGAGAAATTCCAGGGAAAACAATTTTCTCTTTCTGATGCTGACTACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGATTGTTGTTCAGTGACTTCTTGAGGAATCCCAGCTCTTTGGATGAGGCTGCCAAAGAAAAGCTGGGACCATTTGCAACTTTATCTGATGATGAGAGCTACCAAAACCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATATGATGAGAAGGTGCAGCCAACTACTTTGGTACCAAAGCAAGTTGGCAACATGTACACTGCGTCTCTCTATGCAGCCTTTGCATCCCTTATTCACAACAAACATAGCACATTGGTAGGTAACAGGGTGATATTATTCTCTTATGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAAATGCGTGATTGTCAACATCCATTTAGCTTGTCCAACATTGCCCGAGTGATGGATGTTGCTGGAAAATTGAAGTCAAGACACGAGTTTCCTCCGGAGAAGTTTGTTGAAACCCTGAAGCTAATGGAACATAGGTATGGTGCCAAGGAGTTTGTGACAAGCAAGGACACTAGCCTGTTATCTCCAGGCACATTCTATCTCACCGAAGTTGATTCCATGTATCGGAGATTCTATGCAATAAAAGAAAGCAGTTCAACTCCTGTAGCCAACGGTTCAATTGCCAACGGTTCGATTGCCAATGGTCACTGA 1284 0.4237 MSFCTEVEDVISMSLTVVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFSHKYEKFQGKQFSLSDADYFVFHSPYNKLVQKSFARLLFSDFLRNPSSLDEAAKEKLGPFATLSDDESYQNRDLEKASQQVAKPLYDEKVQPTTLVPKQVGNMYTASLYAAFASLIHNKHSTLVGNRVILFSYGSGLTATMFSLQMRDCQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVETLKLMEHRYGAKEFVTSKDTSLLSPGTFYLTEVDSMYRRFYAIKESSSTPVANGSIANGSIANGH. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00388 427 Gene3D - 1 408 IPR016039 GO:0016746
Seca10g00388 427 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 409 - -
Seca10g00388 427 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 132 406 IPR013746 GO:0004421|GO:0006084|GO:0010142
Seca10g00388 427 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 1 131 IPR013528 -
Seca10g00388 427 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 407 - -
Seca10g00388 427 CDD init_cond_enzymes 1 325 - -
Seca10g00388 427 SUPERFAMILY Thiolase-like 133 405 IPR016039 GO:0016746
Seca10g00388 427 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 62 77 IPR000590 GO:0004421|GO:0008299
Seca10g00388 427 NCBIfam hydroxymethylglutaryl-CoA synthase 1 405 IPR010122 GO:0004421|GO:0008299
Seca10g00388 427 SUPERFAMILY Thiolase-like 2 129 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00388 Seca-Chr10 3413981 3419343 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00388 K01641 - gmx:100782595 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00388 10 3413981 3419343 Seca10g00388 10 3413981 3419343 ECH
Seca10g00388 10 3413981 3419343 Seca12g01826 12 20886113 20890958 PCT