Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01657 ATGTGGCGGGCCATGGGTTGGAGAGCGGGTTCGTGCCTGAACGTGAAGGAAAGTACCAGAAAGGCAGAAACAAGAAAAGAACAACAGCTTCTATTCTATTACTGTTCCACTTACAACATCATTTCGTCATTTCTGTGCAAGTTTTGGCCACGCTGCTCAGTGTCACACCCCAATCGTCACCGTTCTCTCCCCAAATCCCTAATTTCCTCACGGGAAACGCTATCTTCTCTAGGATGGAGATTGCTATTAATTTGTTTTCAATTGAATATTAATCTTGCAAAAAAATTACAGCAATTCTGGTCTGGGAGTGCCATCAATAAAAACAAAGGGATGGTGGAGAATTTGCAGCATTATGGAATAATCACATCTAGAAAGGTAGGTGAAATAATGGAAACCATTGATAGAGGTTTATTTGTACCCAATGGAGCCCAACCTTATGTAGACAGCCCCATGCCCATAGGCTACAATGCCACTATATCTGCACCACATATGCATGCCACCTGCCTTCAGTTGCTGGAGGAGAATTTGCAACCTGGGATGCGTGCTCTGGATGTTGGCTCTGGAATTTCTCTGCATTTTTTCTCTGTATTCTCTGCACTTGATGCTCACAATCTCCATACTTTGGGCCTCTCTGCAGGAACAGGGTACCTGACTGCATGTTTTGCCTTAATGGTTGGACCCCAGGGCCGTGCTATTGGTGTGGAACATATTCCTGAATTGGTTTCTTTTTCAATTGAGAATATTGAAAAAAGTGCGGCTGCTCCACAGTTGAAAGATGGTTCCCTTTCTGTGCATGTTGGTGATGGAAGGGAGGGTTGGCCTGAGTTTGCTCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCCAGCACTTATTGACCAGTTGAAGCCAGGTGGTAGAATGGTTATTCCTGTTGGAAACATATTTCAAGATTTACAGGTTGTGGATAAAAGCTCTGATGGTTCTGTCAGTATCCGGACTGAGACTTCTGTTCGATATGTGCCTCTCACTAGCAAAGAAGCTCAACTGCGAGGTTAG 1050 0.4467 MWRAMGWRAGSCLNVKESTRKAETRKEQQLLFYYCSTYNIISSFLCKFWPRCSVSHPNRHRSLPKSLISSRETLSSLGWRLLLICFQLNINLAKKLQQFWSGSAINKNKGMVENLQHYGIITSRKVGEIMETIDRGLFVPNGAQPYVDSPMPIGYNATISAPHMHATCLQLLEENLQPGMRALDVGSGISLHFFSVFSALDAHNLHTLGLSAGTGYLTACFALMVGPQGRAIGVEHIPELVSFSIENIEKSAAAPQLKDGSLSVHVGDGREGWPEFAPYDAIHVGAAAPEIPPALIDQLKPGGRMVIPVGNIFQDLQVVDKSSDGSVSIRTETSVRYVPLTSKEAQLRG. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01657 349 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 99 347 IPR000682 GO:0004719|GO:0036211
Seca12g01657 349 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 267 282 IPR000682 GO:0004719|GO:0036211
Seca12g01657 349 Gene3D Vaccinia Virus protein VP39 99 197 IPR029063 -
Seca12g01657 349 Gene3D Vaccinia Virus protein VP39 198 347 IPR029063 -
Seca12g01657 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 191 IPR029063 -
Seca12g01657 349 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 107 189 - -
Seca12g01657 349 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 205 344 - -
Seca12g01657 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 212 321 IPR029063 -
Seca12g01657 349 CDD AdoMet_MTases 210 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01657 Seca-Chr12 18024344 18027046 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01657 K00573 - gmx:100527082 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01657 12 18024344 18027046 Seca12g01657 12 18024344 18027046 ECH
Seca12g01657 12 18024344 18027046 Seca4g02943 4 50568045 50570417 PCT