Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01598 ATGAAGTCAACATTAAGGTACTTAGCAGGCATTGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAGCAAGTCACTGAAGATTGCTCTTCCTTTATCCCTTCAAATCTAACCGCTCTGATCACTGGTGCTACTTCTGGTATTGGTGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCCAGAAACTTGAAAAAGGCTAGGGAAGTGAGAGAAAATATCCTAGAGGAGAGTCCTGATGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTCTAGCTTTAGAACTGCCCCTTAATATTCTCATAAACAATGCAGGAATATACTCTCAAAACTTGGAGTTCTCTGAAGAGAAAATTGAAATCACATTTGCCACGAATTACTTGGGACATTTTTTGTTAACAAAAATGCTACTAGAGAAAATGATAGATACAGCAAACAGGACAGGAATTCAAGGAAGGATAATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGAAATTGTTTCTGTTTGAACAACATGCTCAGCGCAAAATGCAGTTATAATGGCGCACGTGCATATGCTCAGTCTAAATTAGCCACAATTCTGCATGTGAAGGAAATGGCTAGACAGCTCAAGGCAAGGAATGGCAGAGTAACCATCAATGCAGTGCATCCAGGGATTGTGAAGACAGGAATTATTAGAGCACATAAAAGCCTAATAACGGATTCCCTGTTTTTCATTGCATCCAAGTTGCTGAAATCCATATCACAGGTTAATTTGTAA 825 0.3976 MKSTLRYLAGIAGPSGFGSNSTAEQVTEDCSSFIPSNLTALITGATSGIGAETARVLAKRGVRVVIGARNLKKAREVRENILEESPDAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGIYSQNLEFSEEKIEITFATNYLGHFLLTKMLLEKMIDTANRTGIQGRIINVSSVIHSWVKRNCFCLNNMLSAKCSYNGARAYAQSKLATILHVKEMARQLKARNGRVTINAVHPGIVKTGIIRAHKSLITDSLFFIASKLLKSISQVNL. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01598 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 253 IPR036291 -
Seca12g01598 274 PANTHER RETINOL DEHYDROGENASE 14 271 - -
Seca12g01598 274 Pfam short chain dehydrogenase 198 248 IPR002347 -
Seca12g01598 274 Pfam short chain dehydrogenase 39 180 IPR002347 -
Seca12g01598 274 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Seca12g01598 274 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Seca12g01598 274 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Seca12g01598 274 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Seca12g01598 274 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Seca12g01598 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Seca12g01598 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Seca12g01598 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Seca12g01598 274 Gene3D - 33 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01598 Seca-Chr12 17234738 17237796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01598 41 249 Acyl Lipid Metabolism Gene Families AT3G55290 31.308 1.45e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01598 - - gmx:100776567 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01598 12 17234738 17237796 Seca12g01598 12 17234738 17237796 ECH
Seca12g01598 12 17234738 17237796 Seca4g03009 4 51633515 51634972 PCT