Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01428 ATGAGTGGAGGTCCAGGGATATATTTTGATATTGGGAAGAAGGCCAAAGATGTTCTTCACAATGACTATGCTCATCAATCACCAATTCACTTTCACTACCAATTCATGGACTGGAATTTAGACCTCTCTTGTAAAGTAGATGAAATTGTACCTGGATTTAGGAGCATTTTCAAATGTACCATACCTGATTCCGGGAAGGTGGAACTACAATACTTGAATAAATTCATTGGGATGACTGGATGCATTGGATTAGTAGGAAACACAGAAGGAGGATATGACCCTGTTGTAAGCTGCTCAGGCCTTATAGGAACAAGAATTCTGTCCCTGGGAGCCAATGTTGCTCTTGACATACCAACAAGATCAATCAGCAAGCTAAATGCTGGCTTCAGCTTCAACAGTGCCTTCCTTGTTGCTTCCTTGACCTTGCATGATATGTTTGACACTCTGAAAGCAACCTGTTATCATGAAGTGAACCCCCTAACCAAGACTGCCATTGCAGCAGAGGTGAAGCATAGCTTGTCACTCAATGAGACTGGTGTCACCATTGGTGCTCAGCATGCATTTTTTCCACAAACATTGGTAAAGGCTAGACTTGACACCTTTGGCAAGGCAGGTGCCCTTGTTCAACAAGGGTTATGGCAGAGATTATTTATAACTTTGGCTGGAGAAATGGATTTTTTGGCCACAAATGATAAGGTTCCCAAGGTTGGAGTCTCCCTGGCTCTAAGCCCCTAG 735 0.4313 MSGGPGIYFDIGKKAKDVLHNDYAHQSPIHFHYQFMDWNLDLSCKVDEIVPGFRSIFKCTIPDSGKVELQYLNKFIGMTGCIGLVGNTEGGYDPVVSCSGLIGTRILSLGANVALDIPTRSISKLNAGFSFNSAFLVASLTLHDMFDTLKATCYHEVNPLTKTAIAAEVKHSLSLNETGVTIGAQHAFFPQTLVKARLDTFGKAGALVQQGLWQRLFITLAGEMDFLATNDKVPKVGVSLALSP. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01428 244 Gene3D Porin 3 243 IPR023614 -
Seca12g01428 244 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 40 244 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca12g01428 244 FunFam Mitochondrial outer membrane protein porin 1 isoform A 2 243 - -
Seca12g01428 244 CDD Porin3_VDAC 5 243 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca12g01428 244 Pfam Eukaryotic porin 36 230 IPR027246 GO:0005741|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01428 Seca-Chr12 14300601 14303159 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01428 K15040 - gmx:100787061 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02735 10 35217943 35221463 Seca12g01428 12 14300601 14303159 ECH
Seca12g01428 12 14300601 14303159 Seca12g01428 12 14300601 14303159 ECH