Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02735 ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAAAAAGCCAGAGGTATTGTAATCTGTTACATTTTTTTTTTAAAAAGTAATATATTATTTTTTTCTTTTTTTTATTTTGTTGTAGATCTTCTATTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTGCTATAACCTCCTCTGGAACCAAGAAAGGCGAGCTTTTTGTGGCTGATGTTAACACTCAGTTGAAGAATAAGAACATCACCACTGATATCAAAGTGGACACTGATTCTAATCTCTTCACAACTATCACTGTTAATGAGCCTGCCCCTGGCCTCAAGACCATTCTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAGGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGCGTTGGGCTAACAGCAAACCCAATTGTCAACCTCTCTGGTGTTATCGGAACTAATCTACTTGCCCTCGGTACTGATCTTTCCTTTGACACCAAAATCGGGGAGTTAACAAAATTCAATGCTGGATTGAACTTCACCAAGGATGATTTGGTTGCTTCATTGACTGTGAATGACAAGGGTGATGCTCTGAATGCTTCATACTACCATGTAGTCAATCACTTGACCAACACAGCTGTTGGTGCTGAGGTAACTCACAGATTCTCAACCAACGAGAACACCCTCACACTTGGCACCCAGCATGCATTAGATCCATTGACCACAGTGAAGGCTCGTGTCAACAACTTCGGCAAGGCTAGTGCTCTCATCCAGCATGAGTGGCGTCCCAAGTCATTCTTCACCATTTCTGGGGAGGTTGATACCAAGGCCATTGAGAAGAGTGCAAAGGTCGGATTAGGTTTGGCTCTCAAACCTTGA 903 0.4352 MAKGPGLYSDIGKKARGIVICYIFFLKSNILFFSFFYFVVDLLFKDYHSDQKFTITTYSPTGVAITSSGTKKGELFVADVNTQLKNKNITTDIKVDTDSNLFTTITVNEPAPGLKTILSFRVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNLSGVIGTNLLALGTDLSFDTKIGELTKFNAGLNFTKDDLVASLTVNDKGDALNASYYHVVNHLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTVKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLGLALKP. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02735 300 ProSitePatterns Eukaryotic mitochondrial porin signature. 243 265 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca10g02735 300 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 300 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca10g02735 300 Gene3D Porin 30 299 IPR023614 -
Seca10g02735 300 Pfam Eukaryotic porin 41 293 IPR027246 GO:0005741|GO:0055085
Seca10g02735 300 CDD Porin3_VDAC 5 299 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca10g02735 300 FunFam Outer mitochondrial membrane protein porin 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02735 Seca-Chr10 35217943 35221463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02735 K15040 - gmx:100802449 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02735 10 35217943 35221463 Seca10g02735 10 35217943 35221463 ECH
Seca10g02735 10 35217943 35221463 Seca12g01428 12 14300601 14303159 ECH