Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01270 ATGTTTGGCCCTCGCATTGGCATTCACCGCATCCGCTACTGCTACAGCGCATTATCGTCATCATCTCGCTTTCCATTCCAACGCCACTCTCATGATCCCAAACATCTCACGCGCACACCTTTTCACTTCCATTCTTCCGCCCCTAAACAAGACTCTGATGATTATCCCACTGGTGACTTTAATTTTGAGCCCCTTACGGGCTGGAAAAAGTCTATGGTCAACCTCAGAATGCTATTGGCGTTCCCCTGGGAGCGTGTCCGCCATGGCAGTGTCTTGAAAATCAAGTTGCGCGGCCAGATATCGGATCAGCTGAAGAGTAGGTTCTCACGGGGATTATCTCTGCCTGAAATCTGTGAGAATTTGTTGAAAGCAGCCTATGATCCTCGTATTTCTGCCGTCTATCTCCATATTGATATTTTAAATTGCGGCTGGGCTAAAGTCGAAGAAATTCGGAGGCACATCTTGAATTTCAGAAAATCAGGAAAACTTGTTGTGGCTTATGTCCCTGCATGTCGAGAAAAAGAATATTACATTGCGTGCGCTTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCACTGTTTGGATTGACTGTTCAAACCTCATTCCTCAGAGGTGTTTTAGATAACATTGGAATTGAACCACAAGTGGAAAGGGTTGGCAAATATAAAAGTGCAGGAGATCAACTAACCCGTAGAACCATGTCTGACGATAATCGCGAGATGCTGACAGCATTGCTTGATAATATTTATACAAATTGGCTGGATACAGTCTCTTCTGCTATAGGAAAGAAAAGAGAAGATATTGAAAAATTCATAAATGAAGGTGTCTATCAAGTAGACAGGCTGAAAGAAGAGGGCTTCATATCAAACATAATCTACGATGACGAGGTTATCACTAGGTTGAAGGAGAGACTTCCAGTGAAAACAGATAAAGATCTGCCTATGGTTGATTTCAGAAAATACTCTGGAGTTAGGAAGCGGACTGTCGGAATATCAGGTGGTAAAGAACTGATAGCCATCATCCGAGCCTCAGGGAGTATTCGTCGTGCCGAGAGTCCATTAGGTGTCCGTAGCGCAGGTATCATTGGTGAGAAGTTCATTGAAAAGATTCGCAGTGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATTCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCTGACTTAATGTGGAGAGAAATCAGGCTTCTAGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGCTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATTTTATCAAGGGGTAGATATGCTGAGCTCCTTGCAGCTGAACAGCGTTCTTTTAGGCCAGATGAAGCAGAGCTATTTGCTAAGTCTGCACAGCATGTTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCAATGACTGTGGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACTGGTAAGGACGCAGCTTCTCATGGTTTAGTTGATGCTATTGGTGGGCTTTCTCGAGCTATTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGACAGACAGGTGACGATTGTGGAGCTCTCAAGACCCAGCCCTTCTCTACCCGAGATATTAAGTGGTCTAGGTAATACTCTTGTTGGAGTGGACAGAACTTTAAAGGAACTGCTACAGGACTTGACATTTTCTGATGGAGTTCAAGCACGGGTGGATGGAATCATGTTTCAGAAATTGGAAGGATATCCATACGCCAACCCCATTTTGGCAATGATAAAAGATTACCTCAGTTCCCTCTAG 1923 0.4363 MFGPRIGIHRIRYCYSALSSSSRFPFQRHSHDPKHLTRTPFHFHSSAPKQDSDDYPTGDFNFEPLTGWKKSMVNLRMLLAFPWERVRHGSVLKIKLRGQISDQLKSRFSRGLSLPEICENLLKAAYDPRISAVYLHIDILNCGWAKVEEIRRHILNFRKSGKLVVAYVPACREKEYYIACACEEIYAPPSAYFSLFGLTVQTSFLRGVLDNIGIEPQVERVGKYKSAGDQLTRRTMSDDNREMLTALLDNIYTNWLDTVSSAIGKKREDIEKFINEGVYQVDRLKEEGFISNIIYDDEVITRLKERLPVKTDKDLPMVDFRKYSGVRKRTVGISGGKELIAIIRASGSIRRAESPLGVRSAGIIGEKFIEKIRSVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEILSRGRYAELLAAEQRSFRPDEAELFAKSAQHVYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDRQVTIVELSRPSPSLPEILSGLGNTLVGVDRTLKELLQDLTFSDGVQARVDGIMFQKLEGYPYANPILAMIKDYLSSL. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01270 640 SUPERFAMILY ClpP/crotonase 83 295 IPR029045 -
Seca12g01270 640 CDD S49_SppA_67K_type 92 305 IPR047217 -
Seca12g01270 640 SUPERFAMILY ClpP/crotonase 333 545 IPR029045 -
Seca12g01270 640 PIRSF Protease_4_SppA 39 640 IPR004634 GO:0006465|GO:0008233|GO:0016020
Seca12g01270 640 PANTHER PROTEASE 4 45 639 - -
Seca12g01270 640 CDD S49_Sppa_N_C 340 554 IPR047272 -
Seca12g01270 640 Gene3D - 483 608 - -
Seca12g01270 640 NCBIfam signal peptide peptidase SppA 341 553 IPR004635 GO:0006508|GO:0008233
Seca12g01270 640 Gene3D - 336 482 - -
Seca12g01270 640 Gene3D - 230 325 - -
Seca12g01270 640 Gene3D - 89 228 - -
Seca12g01270 640 Pfam Peptidase family S49 157 307 IPR002142 GO:0006508|GO:0008233
Seca12g01270 640 Pfam Peptidase family S49 408 558 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01270 Seca-Chr12 12399953 12409753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01270 K04773 - gmx:100809623 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01270 12 12399953 12409753 Seca12g01270 12 12399953 12409753 ECH
Seca12g01270 12 12399953 12409753 Seca4g03412 4 59562733 59567873 PCT