Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00697 ATGGTTTTCAAGAAGCCACGAATTGTGATAATTGGAGCAGGAATGGCAGGGCTCACAGCTGCCAATAAGCTCCATACTATCACTGGCTCCAAAGACTTGTTTGAGCTGTGTGTTGTAGAAGGTGGAAACAGGATTGGTGGCAGAATCAACACATTAGAGTTTGGTGGTGACAGAATTGAGATGGGTGCTGCTTGGATCCATGGAATTGGAGGCAACCCAATTCACAAAATTGCTAAACAAATCCATTCATTGGAGTCTGAGGAGCCTTGGGAATGCATGGATGGAAATGGGAACTCAAATAAACTCACTACTATTGCTGAAGGTGGCTATGCCTTATACCCTTCCATTGTTGACCCCATCACAGAACTTTTCAACAATCTGATGGATCATGCTCAGGGGAAGCTGACTGAAGACAGTGAAAAAAGTGAACTTCAAAGTGACTATAAGCTAGATGCTAAAGCTTCCAAGATGTCAACAACAAAAGGTGACTCTGGAAACCACAGTGTTGGTTCTTTTCTCAGACAAGGCCTTGATTGTTACTGGCTTTCAGCTAAAGAGGAAGAGGAGCTCAAAGGGTGTGGAAAATGGAGCAGGAAGTTACTTGATGAAGCAATCTTTGCAATGCATGAGAACAACCAGAGAACTTATACATCTGCTGGTGACTTGTTCACTCTAGATTATAGTGCAGAGAGTGAATACCAAATGTTTCCAGGGGAAGAAATCACAATTGCCAAAGGCTATATGAGCATAATTGAATCCTTAGCATCTGTATTACCACATGGGTTAGTTCAGTTTGGTAGAAAAGTCACAAGAATCGAATGGCAGCCCAAGAGACATGTACATGTACATGATTCTATGAATATGGAAAATGGTCACTGTTCTAGGCCTGTGAAGCTACACTTTTGTGATGGCTCTATTATGTATGCTGATCATGTCATTGTCACAGTTTCACTGGGAGTGCTAAAGGCTGCTATTCAAGATGATGATTCAGGTATGTTCTGTCCTCCTCTGCCTCCATTCAAGGTTGAGGCAATTTCAAGGCTTGGTTTTGGTGTTGTTAATAAGTTGTTTATGCAATTGAGTCCTACACATGAAAGAAAAGATGAAGACCCCAAAGGGTTCCCCTTCCTGCAAATGGTTTTTCATTCACCTCACTCTGAATTGAGGAACAAGAAAATACCCTGGTGGATGAGGAGGACAGCTACCCTTTGTCCCATATACAAGAATTCTAGTGTCCTCCTATCTTGGTTTGCAGGGGAAGAAGCATTGGCACTTGAATCACTCAAAGATGAAGAGATCATTGAAGGGGTTTCAGCCACAGTTTCAAGCTTCCTATCAAATTCCCACTTGCAAAGGGGTACTTATTCACATAAGTTTTGCAACGGGAATGAAGTGAAATTCAGTAAGGTCTTAAAGAGCCAATGGGGAACAGATCCGTTATTTTTAGGGTCATATAGTCATGTGGCAGTTGGATCAAGTGGTGATGATCTAGATACAATGGCAGAACCATTGCCAAAATATAGCAGTTGCCAGCCTTTTGCTTCACCACCACTTCCACTTCAAATTTTGTTTGCAGGGGAAGCAACCCACAGAACTCATTATTCTACAACTCATGGAGCTTACTTCAGTGGTCTTAGGGAAGCCAATAGGCTTCTTCAACATTATCATTGGGTTTAG 1677 0.421 MVFKKPRIVIIGAGMAGLTAANKLHTITGSKDLFELCVVEGGNRIGGRINTLEFGGDRIEMGAAWIHGIGGNPIHKIAKQIHSLESEEPWECMDGNGNSNKLTTIAEGGYALYPSIVDPITELFNNLMDHAQGKLTEDSEKSELQSDYKLDAKASKMSTTKGDSGNHSVGSFLRQGLDCYWLSAKEEEELKGCGKWSRKLLDEAIFAMHENNQRTYTSAGDLFTLDYSAESEYQMFPGEEITIAKGYMSIIESLASVLPHGLVQFGRKVTRIEWQPKRHVHVHDSMNMENGHCSRPVKLHFCDGSIMYADHVIVTVSLGVLKAAIQDDDSGMFCPPLPPFKVEAISRLGFGVVNKLFMQLSPTHERKDEDPKGFPFLQMVFHSPHSELRNKKIPWWMRRTATLCPIYKNSSVLLSWFAGEEALALESLKDEEIIEGVSATVSSFLSNSHLQRGTYSHKFCNGNEVKFSKVLKSQWGTDPLFLGSYSHVAVGSSGDDLDTMAEPLPKYSSCQPFASPPLPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHWV. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00697 558 Pfam Flavin containing amine oxidoreductase 15 552 IPR002937 GO:0016491
Seca12g00697 558 SUPERFAMILY FAD-linked reductases, C-terminal domain 349 487 - -
Seca12g00697 558 Gene3D - 96 493 - -
Seca12g00697 558 PANTHER FLAVIN MONOAMINE OXIDASE 6 556 - -
Seca12g00697 558 FunFam Putative polyamine oxidase 5 isoform A 494 550 - -
Seca12g00697 558 Gene3D - 8 550 IPR036188 -
Seca12g00697 558 SUPERFAMILY FAD/NAD(P)-binding domain 3 555 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00697 Seca-Chr12 6377470 6379146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00697 K12259 - gmx:100809633 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00697 12 6377470 6379146 Seca12g00697 12 6377470 6379146 ECH
Seca12g00697 12 6377470 6379146 Seca6g03774 6 105084852 105086540 PCT