Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00640 ATGACTGGAATGGCAAAGGAAGAAGAGTCATATAGTCCTAGTTGGGGTGCTTCTTTCTTTATGCAGACAACAATGTCATCCATGATGAATTCATCAAAAGAAGATAATAGTGGTAGCCAACTTCAAAGACTGCAGTATCAAGTTACAAAAATGTTAAAGGGCTTTTCACGCCCTCCTGATGTTGAAAACACAAATTACAATCCTGAAATCCTGACTAGTCTGAAGCGTCAATGGGCTGCTAACTTTCAGTTGCAACACATGGACCAGAGATCCTGGAAGGAGCCCTCACGGCTGTTTGAGAGCATGGTGGTTGTTGGACTTCCTCCTAATTGTGATGTTCAGGCACTGCAAAGGCAATATGTTAATAGAAAGTTTGAAGGATCTGGTAACTTAAGAAGTGCACTTGGTTATCAGAATCAATCTCGTGTAGAACCCAATATTGAACCTCAGGTTATGATCTTTGTCTTATTTGTTTACCCTCCAGATAAACAGCTGCCTCTTAAATGCAAGGATCTTCTTTCTTTCTGTTTCCCTGGGGGCTTGGAGGTTCATGCAGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTTTTTGGACAGGAACACCTTAAACAAAGGGATCTGTCATTTGTATTCAGGTTACAGGGTGCTGACAACTCAACACTTTATGGGTGTTGTGTCTTAGTTGAAGAACTAGTGCAAAAGCCCTCTGGATTGCTCTCTCTGATTTCTGATAAGCAGCCATCTCACTCTTCTCTGAGACGTCATATATTAACCACTCAGAGATGTTACTGCATTCTTTCAAGGCTTCCAGTTTTTGAATTGCACTTTGGTGTATTAAATAGCATCTTCACACAAGAAAGGCTAGAGCGGTTGACTAGAAGTGTTGGAGATTTGAATTTAGAATTTGTTGAAGGTAACTATGAAGATGAAAACTCAGATGGCAATTCAGAGAGTGTGTTGGTGACCAATGGACCAATAGAGGACATACCTGATGGAAATCCAATAATTTCTCAACCAAGTGCAAAAAAGTCTACACCCGAAAACATTGTGGGTGATGGTCACCCAGAGGACCTAATGGTTAATGAGGAGATGCAGACAAACAAGGGGAGAATAAATTATGACAATGTTGTGCCTACTGAGCCTGAAACTGGTAGGACAACAGCCAAAGAAGAATCTGGTGCCACAAATTCTGGAGATAGTGATCAGTATGGAGATGCGTTTGGAACCAACAAAGAATCAGAACATAGGCATTTACCCAATGCTATTTTGCCCCTTCTGCGCTATTGCCAATATGAAAGCTCTGAATCTTCCTGCAGTTTTCAAGGCTCTCCTTGTGAAGACAGAAATTTTAGGAGTGACATGGATGATAATGAGACAGAAGATACATCTATCTCTGGCCAAGAGGATTTAAATGAGTTAAATGATATTCTTGAATGGGCTAAGGAAAATAACCATGGACCACTACGAATTATATGTGAGTATTACCGATTAACTTGCCCTGCCAGGGGTGCAACACTTAAATTCCATCCTTTGGAGCACCTGCATCCCTTGGAATATCATAGGCCAGCTGGGACCATTCTTCATCTTGCTGGTTCGACAATTGACTTGAAAACTTGCAATACCGGTCTGGAATTAGCTGATGTATGCTGTCATAGTAACTTTTTTTTTTGTTGCTCTCAGGCACATAATGCTCTTCTGGTGGAAGAGGCAACTGCATTATCTATATGGGCTGTAGCTTGCATATGTGGTACCTTGAGACTTGAAAATGTTTTGACATTCTTTGCTGGAGTTCTGTTAGAGAAGCAGATTATTGTTCTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCTCTAATCCAGCCTTACCAATGGCAGAGCCTGCTCATGCCAGTTTTACCAAATGACATGCTTGAGTTTTTAGATGCACCTGTCCCTTACGTAGTTGGTATCAAGAACATGACCAGTGAAGTTCAGTCAAAGTTTACCAATGTTATTCTGGTTGATGCTAATAGAAATCAGGTGAAGTCACCAACAATACCACAACTGCCAAGACAGAAAGAGCTACTCTCATCTTTACGTCCTTACCATGCAACTCTTGTTGGGGAAAGTTACTTGGGTAGGAGAAGGCCGGTGTATGAATGCACAGAAGTCCAGATTGAAGCTGCAAAAGGGTTCCTTTCAGAGTTAAGGTTTTACTTGGATTCTCTTTGCCGTAACATTCGTTCTCACACAATTACCAATGTACAATCCAATGACGATAAGGTATCTTTGCTTTTGAAGGAGAGTTTCATTGACTCGTTCCCTTATCGTGATCGGCCATTTATGAAGGTTATTTCTTGA 2364 0.4095 MTGMAKEEESYSPSWGASFFMQTTMSSMMNSSKEDNSGSQLQRLQYQVTKMLKGFSRPPDVENTNYNPEILTSLKRQWAANFQLQHMDQRSWKEPSRLFESMVVVGLPPNCDVQALQRQYVNRKFEGSGNLRSALGYQNQSRVEPNIEPQVMIFVLFVYPPDKQLPLKCKDLLSFCFPGGLEVHAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLLSLISDKQPSHSSLRRHILTTQRCYCILSRLPVFELHFGVLNSIFTQERLERLTRSVGDLNLEFVEGNYEDENSDGNSESVLVTNGPIEDIPDGNPIISQPSAKKSTPENIVGDGHPEDLMVNEEMQTNKGRINYDNVVPTEPETGRTTAKEESGATNSGDSDQYGDAFGTNKESEHRHLPNAILPLLRYCQYESSESSCSFQGSPCEDRNFRSDMDDNETEDTSISGQEDLNELNDILEWAKENNHGPLRIICEYYRLTCPARGATLKFHPLEHLHPLEYHRPAGTILHLAGSTIDLKTCNTGLELADVCCHSNFFFCCSQAHNALLVEEATALSIWAVACICGTLRLENVLTFFAGVLLEKQIIVLCSNLGILSASVLSVIPLIQPYQWQSLLMPVLPNDMLEFLDAPVPYVVGIKNMTSEVQSKFTNVILVDANRNQVKSPTIPQLPRQKELLSSLRPYHATLVGESYLGRRRPVYECTEVQIEAAKGFLSELRFYLDSLCRNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKVIS. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00640 787 Pfam DENN (AEX-3) domain 582 678 IPR001194 -
Seca12g00640 787 Gene3D - 86 298 - -
Seca12g00640 787 MobiDBLite consensus disorder prediction 391 410 - -
Seca12g00640 787 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 27 785 - -
Seca12g00640 787 Gene3D - 577 732 IPR043153 -
Seca12g00640 787 MobiDBLite consensus disorder prediction 328 357 - -
Seca12g00640 787 MobiDBLite consensus disorder prediction 439 468 - -
Seca12g00640 787 SMART DENN_cls 261 680 IPR001194 -
Seca12g00640 787 ProSiteProfiles Tripartite DENN domain profile. 153 787 IPR037516 -
Seca12g00640 787 Pfam uDENN domain 155 230 IPR005113 -
Seca12g00640 787 MobiDBLite consensus disorder prediction 376 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00640 Seca-Chr12 5753571 5770161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00640 - - gmx:100801645 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00640 12 5753571 5770161 Seca12g00640 12 5753571 5770161 ECH
Seca12g00640 12 5753571 5770161 Seca6g03714 6 104390215 104402439 PCT