Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00568 ATGGCTACCGATCGTCTGACTCGAGTTCACAGTCTCCGTGAGAGGCTTGATGAAACCTTGACTGCAAACAGGAATGAAATTTTGGCCCTTCTCTCAAGGATCGAAGCTAAGGGCAAGGGGATCCTGCAGCACCACCAAGTCATTGCTGAGTTTGAGGAAATCCCTGAGGAGAACAGACAGAAGCTGATTGATGGGGCCTTTGGAGAAGTTTTGAGATCCACACAGGAAGCCATAGTTTTACCACCATGGGTTGCTCTGGCTGTTCGTCCAAGGCCTGGTGTTTGGGAGTACTTGAGAGTGAATGTGCATGCTCTTGTTGTTGAAGAGTTGCAACCTGCTGAGTTCCTTCGCTTCAAGGAGGAACTTGTTGATGGAAGCAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCATTTACTGCCTCCTTTCCCCGCCCAACTCTCAACAAGTCAATTGGAAATGGTGTGCAGTTCCTCAACCGTCACCTTTCTGCCAAACTCTTCCATGACAAGGAGAGCTTACACCCACTTCTGGAATTCCTCAGACTTCACAGCTACAAGGGAAAGGCTTTGATGTTGAATGACAGAATTCAAAACCCTGATTCTCTTCAACATGTTTTGAGGAAAGCTGAAGAGTATCTAGGCACACTTCCTCCTGAAACACCTTACTCAGAATTTGAGCATAGGTTTCAGGAGATTGGTTTGGAGAGAGGTTGGGGTGACACTGCTGAGCGTGTCCTTGAGTCTATTCAACTTTTGTTGGATCTTCTTGAGGCTCCTGACCCTTGCACCCTTGAGACTTTCCTTGGAAGAATCCCTATGGTCTTTAATGTTGTGATCCTTTCACCACATGGTTACTTTGCTCAAGATAATGTCTTGGGGTACCCTGATACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTTCGTGCTTTGGAGAATGAGATGCTCCATCGCATTAAGCAACAAGGCTTGGATATTATCCCTCGCATTCTCATTATCACCCGTCTTCTACCTGATGCAGTAGGAACTACTTGTGGCCAACGTCTTGAGAAGGTATTTGGAACTGAGCATTGCCACATTCTTCGTGTTCCCTTCAGAAATGAGAAGGGAATTGTTCGCAAGTGGATCTCAAGATTCGAAGTCTGGCCCTACCTAGAAACTTACACTGAGGATGTTGCTCATGAGCTTACCAAGGAGTTGCAAGGCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAAGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATACCCTGAATCTGACATTTACTGGAAGAAATTTGAAGAGAAGTATCACTTCTCCTGCCAATTTACAGCTGATCTCTTTGCAATGAACCACACTGACTTCATTATCACCAGTACCTTCCAAGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTATGAGAGTCACACTGCCTTCACCCTTCCTGGACTCTACCGTGTTGTTCATGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTATCCCCTGGAGCTGATCAAACCATTTACTTCCCATACACTGAAACTAGCCGAAGGTTGACATCTTTCCACCCTGAAATTGAAGAGCTTCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTATTGAAGGACCGAAGCAAGCCAATTATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATTACAGGACTTGTTGAGTGGTATGGTAAGAATGCTAAGCTGAGGGAGTTGGTGAACCTTGTTGTTGTAGCTGGAGATAGGAGGAAGGAATCCAAGGACTTGGAAGAGAAAGCTGAGATGAAGAAAATGTATGGCCTCATTGAGACCTACAAGTTGAATGGACAATTCAGGTGGATTTCCTCACAGATGAACAGAGTTAGAAATGGAGAGCTGTACCGTGTCATTTGTGACACAAAGGGAGCATTTGTGCAACCTGCTATCTATGAAGCTTTTGGTTTGACAGTTGTTGAGGCAATGACTTGTGGGTTGCCAACATTTGCTACTTGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGCAAATCTGGATTCCACATTGATCCTTACCATGGTGACCGTGCTGCTGACCTTCTTGTTGACTTCTTTGAGAAGTGCAAGGTAGACCCAACTCACTGGGACAATATCTCCCAGGGTGGTCTGCAACGTATTGAGGAGAAGTACACATGGCAAATTTACTCTCAGAGGCTTCTTACTCTCACTGGTGTCTATGGTTTCTGGAAGCATGTGTCTAACCTTGACCGCCGTGAGAGCCGCCGTTATCTTGAGATGTTCTATGCTCTCAAATACCGCAAATTGGCTGAGTCTGTGCCACTTGCTGTTGAAGAGTAA 2424 0.453 MATDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEENRQKLIDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEFLRFKEELVDGSSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKALMLNDRIQNPDSLQHVLRKAEEYLGTLPPETPYSEFEHRFQEIGLERGWGDTAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLHRIKQQGLDIIPRILIITRLLPDAVGTTCGQRLEKVFGTEHCHILRVPFRNEKGIVRKWISRFEVWPYLETYTEDVAHELTKELQGKPDLIVGNYSDGNIVASLLAHKLSVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFHPEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAIYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKVDPTHWDNISQGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVEE. 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00568 807 Pfam Sucrose synthase 8 554 IPR000368 GO:0005985|GO:0016157
Seca12g00568 807 PANTHER - 7 805 IPR012820 GO:0005985|GO:0016157
Seca12g00568 807 NCBIfam sucrose synthase 24 803 IPR012820 GO:0005985|GO:0016157
Seca12g00568 807 Gene3D Glycogen Phosphorylase B; 528 754 - -
Seca12g00568 807 FunFam Sucrose synthase 147 276 - -
Seca12g00568 807 Gene3D - 147 276 - -
Seca12g00568 807 FunFam Sucrose synthase 11 146 - -
Seca12g00568 807 Gene3D Glycogen Phosphorylase B; 281 797 - -
Seca12g00568 807 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 296 764 - -
Seca12g00568 807 FunFam Sucrose synthase 281 551 - -
Seca12g00568 807 Pfam Glycosyl transferases group 1 565 735 IPR001296 GO:0016757
Seca12g00568 807 Gene3D - 25 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00568 Seca-Chr12 5106724 5112330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00568 6 807 Glycosyltransferase AT3G43190 85.287 0.0 1435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00568 K00695 - gmx:547508 1574.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00568 12 5106724 5112330 Seca12g00568 12 5106724 5112330 ECH
Seca12g00568 12 5106724 5112330 Seca6g03655 6 103781626 103787067 PCT