Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00554 ATGTGGAGTCTGATGCACCCTTCATTTCTGTTACAGATATGGAACTGTTCACGTGATGAAGCTGATATTCGTGTCCATGAGTTTTTTAAGACACCATATTTCAAGTCAGGGATCTACCCTCTCCCAGGTGCTCAGACGGCACTTCAAAAGTTATCAAGATTTTGTAACCTAGCAGTTGTAACGTCGCGACAGAATGCAATTAAGGATCACACAATTGAATGGATAGAGAATTATTTTCCAGGACTGTTTCATGAGATTCACTTTGGTAACCACTTTGCTCTTGATGGGGTGTCACGACCAAAGTCAGAGATTTGTAGGTCTCTAAATGCCAAGGTTCTTATTGATGATAATCCACGGTATGCCATAGAGTGTGCTGAAGTCGGAATTAAAGTCCTACTTTTTGATTATGAAAACTCATATCCTTGGAGCAAGAATGAGTCTGTTGATCAGCACCCTTTGGTGACCAAAGTCAAGAACTGGAAAGAAGTGGAACAACAATTAATGTTAATGATAGCTTCATAG 522 0.4004 MWSLMHPSFLLQIWNCSRDEADIRVHEFFKTPYFKSGIYPLPGAQTALQKLSRFCNLAVVTSRQNAIKDHTIEWIENYFPGLFHEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAIECAEVGIKVLLFDYENSYPWSKNESVDQHPLVTKVKNWKEVEQQLMLMIAS. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00554 173 Pfam 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 19 167 IPR010708 GO:0008253|GO:0009264
Seca12g00554 173 Gene3D - 22 170 IPR023214 -
Seca12g00554 173 PANTHER NUCLEOTIDASE YQFW-RELATED 10 172 - -
Seca12g00554 173 SUPERFAMILY HAD-like 16 167 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00554 Seca-Chr12 4912549 4915389 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00554 - - gmx:100783615 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00554 12 4912549 4915389 Seca12g00554 12 4912549 4915389 ECH
Seca12g00554 12 4912549 4915389 Seca6g03643 6 103668662 103672126 PCT