Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00534 ATGGTAGAAACTAAGGATGGAACTGTCTCTGTAGCTTCTGCATTTGCTGGTCACCAGGAAGTTGTGCAGGATAGAGATCACAAATTTTTAAGAAAAGCAGTTGAAGAAGCATATAAAGGGGTAGATTGTGGACATGGAGGCCCTTTTGGTGCTGTTATTGTTTGTAATGATGAAGTAGTTGTTAGTTGTCACAACATGGTTCTGAGTAACACAGACCCAACTGCTCATGCAGAGGTGACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGCAGATAGAACTTTCAAATTGTGAAATATATGCTTCTTGTGAACCTTGCCCAATGTGCTTTGGCGCAATCCACCTTTCTCGAATTAAGAGGTTGGTTTATGGAGCAAAGGCTGAGGCAGCAATTGCTATTGGATTTGATGATTTCATAGCAGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCACAGTTGGAGATTAAAAGAGCTGATGGTAATGAGGCCATCATTGCCGAAGAGGTTTTTGAGAAAACAAAGGAAAAATTCCAAATGTATTAA 546 0.4029 MVETKDGTVSVASAFAGHQEVVQDRDHKFLRKAVEEAYKGVDCGHGGPFGAVIVCNDEVVVSCHNMVLSNTDPTAHAEVTAIREACKKLKQIELSNCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNEAIIAEEVFEKTKEKFQMY. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00534 181 SUPERFAMILY Cytidine deaminase-like 19 139 IPR016193 GO:0003824
Seca12g00534 181 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 24 138 IPR002125 -
Seca12g00534 181 CDD nucleoside_deaminase 30 137 - -
Seca12g00534 181 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 25 124 IPR002125 -
Seca12g00534 181 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 76 113 IPR016192 GO:0008270|GO:0016787
Seca12g00534 181 Gene3D Cytidine Deaminase, domain 2 25 181 - -
Seca12g00534 181 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 19 128 - -
Seca12g00534 181 FunFam tRNA-specific adenosine deaminase 24 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00534 Seca-Chr12 4735473 4738688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00534 - - cam:101506670 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00534 12 4735473 4738688 Seca6g03632 6 103593140 103595882 PCT