Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00518 ATGAAGCAAAAATCACCACCCCCACCAGCAGGTCTACCAGTAGCAACCCCAGCTAGAAGTGTGTTGAAGCAGCACAGTGATAAGTCTTTGCAGAGTTTAGCAACACCACGCTTCAGAGCTTCCTCCAAGGCCAGAGAATCTCCAAAGACCCCACCAGAGGTTGTCAATAGGGTATCCATTTCATCAACAAGAGCTAAGTCAGTGCCCCCTGACTTGAAGAACATTTCAAAGGCCAAAAGGGGTAGTGTGCTGAACAAGCCTAAATCAAATGAAGAGGTTGAGGGGTCTCAAAAGGGTAGAGAAGCTGAAGAGGGTAAGGTTGTTGTTGTTGCTAGGCCACGGCGAAGGGTTGGGGATTTAGGTTTGAGGAAGAGTGAAGATGACCCTGATGGGAAGAAGAAGAAGGAGTTGCAGGAGAAGCTTGAGGTGAGTGAGAATTTGATTAAGAATTTGCAGTCTGAGGTGCTTTCATTAAAGGCTGAATTGGATAAAGTTAAGAGCTTGAACGTGGAGATTGAGTCTCAGAACAGAAAGCTCACTCAGGATCTTGCTGCTGCTGAAGCTAAGGTAGCAGCCGTTGGCGGCAGTAGTGGAAAGAAGGAGCAAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTCATTGCTGACAAATTGGAAAGATCTAAAGTGAAAAAGGAAGCTACTCCTGAAGTAATTTTTGTTAAAGCATCAATTCCTGCTCCAACACCAAGACATGCCATTCCTGAAAATACAAGTATAAAAAGAAAATCTCCACCCAACCCTTGCCTGCTGCCACCTCCTCCACCGCCGCCGCCACCAATCCCATCTCGGCCTTTAACAAAATTGGCTAACACCCAAAAGGCCCCTGCAATTGTTGAACTGTTTCACTCCTTGAAGAATCAAGATGGGAAGAAAGGCTCAAGAGGGTTGATGAATCATCAGAAACCAGTAGCTATTAGTGCACACAGTAGCATTGTAGGAGAAATTCAGAACCGTTCAGCTCATCTTTTAGCAATAAGGGCAGACATTGAAACAAAAGGAGAGTTCATTAACGACCTTATTAAAAAGGTGGTGGATGCAGCCTACATGGACATTGAAGAGGTCCTAAAGTTTGTTGATTGGCTTGATGGTGAACTATCATCATTGGCTGATGAACGGGCTGTCTTGAAGCATTTCAAGTGGCCTGAGAAAAAAGCTGATGCAATGCGAGAGGCTGCAGTTGAGTATCGTGAGCTTAAAATGTTAGAACAAGAGATTTCTTCCTACAAGGATGACCCTGAGATTCCATGTGGAGCTGCATTGAAAAAGATGGCCAGCCTATTAGACAAGTCTGAACGGAGCATACAGAAGCTAATCAAGCTGCGAAATTCTGTCATACATTCATATCAAGCATACAACATTCCAACTGCATGGATGCTTGATTCAGGAATAATGAGCAAGGTATCATTTTTTATGCTTTTACACTAA 1479 0.4381 MKQKSPPPPAGLPVATPARSVLKQHSDKSLQSLATPRFRASSKARESPKTPPEVVNRVSISSTRAKSVPPDLKNISKAKRGSVLNKPKSNEEVEGSQKGREAEEGKVVVVARPRRRVGDLGLRKSEDDPDGKKKKELQEKLEVSENLIKNLQSEVLSLKAELDKVKSLNVEIESQNRKLTQDLAAAEAKVAAVGGSSGKKEQIGEHQSPKFKDIQKLIADKLERSKVKKEATPEVIFVKASIPAPTPRHAIPENTSIKRKSPPNPCLLPPPPPPPPPIPSRPLTKLANTQKAPAIVELFHSLKNQDGKKGSRGLMNHQKPVAISAHSSIVGEIQNRSAHLLAIRADIETKGEFINDLIKKVVDAAYMDIEEVLKFVDWLDGELSSLADERAVLKHFKWPEKKADAMREAAVEYRELKMLEQEISSYKDDPEIPCGAALKKMASLLDKSERSIQKLIKLRNSVIHSYQAYNIPTAWMLDSGIMSKVSFFMLLH. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00518 492 MobiDBLite consensus disorder prediction 1 138 - -
Seca12g00518 492 MobiDBLite consensus disorder prediction 245 284 - -
Seca12g00518 492 Coils Coil 134 189 - -
Seca12g00518 492 Coils Coil 402 429 - -
Seca12g00518 492 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 23 484 IPR040265 -
Seca12g00518 492 MobiDBLite consensus disorder prediction 84 138 - -
Seca12g00518 492 MobiDBLite consensus disorder prediction 54 69 - -
Seca12g00518 492 MobiDBLite consensus disorder prediction 22 38 - -
Seca12g00518 492 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00518 Seca-Chr12 4636336 4640486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00518 - - gmx:100798183 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00518 12 4636336 4640486 Seca12g00518 12 4636336 4640486 ECH
Seca12g00518 12 4636336 4640486 Seca6g03628 6 103564556 103568438 PCT