Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00511 ATGTATGGGCGAGAATTGGTGGACCTGCGAAAGGAGAGTCGATGGGAGTTTCTCAATACACTGTTCTCTGTGTCTGAAGCTGTGGCCTACATGCAGATGGTTGATAGATTGGATGATGGGACTATATCATCCGATCTTGGCCCCCTTGATTATAAAGGGCTTTATAAGGCTGTTGGAAAAGCTCTCTTCTGGGCTCATGTAGAAGGTCGTCTTAAGAGCGAGATCATGTCTAAGCCTGAACAGTTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAGGCTGGCAAAAAGCTTCTACTTATTACAAACTCAGATTATCATTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAATGATATGGGTTGGAGAGATCTGTTTGACATTGTAATTGTGTCAGCAAGAAAACCAGAGTTCTTCCAAATGTCACACCCTATGTATGAAGTGGTGACAGGCGAGGGTCTGATGCGTCCATGCTTCAAGGCTCAAACTGGTGGTTTGTACTCAGGGGGAAGTGCACAGATGGTTGAAAATTCTCTAAATATACATGGAGATGAGATATTGTATGTTGGTGACCATATTTACACTGATGTCAGTCAATCCAAAGTCCATTTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGTACAGTGCCTTGATTCGTAGCCGGAATCATAGGGAATCATTGGTGGAGCTTATAAATCAAAAGGAGGTTGTAGGGGATCTCTTTAACCAACTTCGGCTGGCTCTGCAGAGGCGAAGCAAAGACCGTCCTGCTCAAACTCTTGCAGCAACTAACATGAACGATGAAGACCTCACCGAAAGCATGCAAAAGCTACTTATTGTTATGCAAAGACTGGATGAGAAAATTGCTCCAATGCTAGAGGCAGATGGGGAGCTCTTCAATTCAAGGTGGGGCTTTCTATCTCGTGCTGGACTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAATATGCTGATATTTATACATCTAGAGTGTCAAATTTTTTATATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGAACCTTGCACATGACTCATACACACACTATTGTTCCCAACTCAATAATGAGTTATCTTCCTAG 1155 0.4286 MYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVDRLDDGTISSDLGPLDYKGLYKAVGKALFWAHVEGRLKSEIMSKPEQFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMRHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPMYEVVTGEGLMRPCFKAQTGGLYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYSALIRSRNHRESLVELINQKEVVGDLFNQLRLALQRRSKDRPAQTLAATNMNDEDLTESMQKLLIVMQRLDEKIAPMLEADGELFNSRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLYYTPFMYFRSQEQNLAHDSYTHYCSQLNNELSS. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00511 384 Gene3D - 64 252 IPR023214 -
Seca12g00511 384 FunFam Haloacid dehalogenase hydrolase 61 252 - -
Seca12g00511 384 NCBIfam HAD-IG family 5'-nucleotidase 1 242 IPR008380 -
Seca12g00511 384 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 1 369 IPR008380 -
Seca12g00511 384 Pfam 5' nucleotidase family 1 370 IPR008380 -
Seca12g00511 384 SUPERFAMILY HAD-like 1 371 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00511 Seca-Chr12 4556153 4563483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00511 - - vun:114174902 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00511 12 4556153 4563483 Seca12g00511 12 4556153 4563483 ECH
Seca12g00511 12 4556153 4563483 Seca6g03627 6 103546067 103557275 PCT