Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00474 ATGCTAGTACAGTGCTCTCTATTTGGCCGTAAACGACTATATTTAGTTCAAGGTTTACTGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATCATGGCTTTGGGTATGATGCTGTTTCTACTCTACAGCCTTAAAGGAATTCAGCCACAGAAGCAATCAACAAAACAGTCGGCATACAATTTTTTCAATAACCATTCAACTGATGATTCTATTAAAGGAAGCAGAAATCTTTCAGTAAACTCTTCTGAGATGGAACTAAAAAGGGTACTACCAAAACCAACAAAAAAACCACATTTGGTACATGTTGCAGGGCTTGATGATCTGTTTCACATGAAAAATTTATCTGAAGGAGAGATGAATCCTGTGCTTCTTTGGACTTCCTTGCGTTCCTTGCTGTCGAGGTCAGATGCTTTGCCTGAAACTGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGATTTGCTGTCCACTGTTGAAAAGGACAAAGCTTCTAAGATTAGTAAGATAGACAGCCCAGAAAATCAAAACTGCCCATTCTCTGTTACCACACTTGGTAAGACAGTAGCAGATAGTGGAATCACTGTGGATATCCCTTGTGGTTTGGTGGTAGACTCTTCTATTACATTGATTGGCATCCCTAATGGAAAAAATAGAAGCTTTCAGATTGACCTTGTTGGGCAAGAGCTAGAAGAGGAGCCAAATCCTCCAATTATCTTGCATTACAATGTCAGTCTTCCAGGAGAAAACATGACAGAGGAACCATATATTGTTCAAAATACATGGACTAGTGATTTTGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCGTGGTTCTGCTAACATCCAAAAAGTTGATGGACTTGTTCTCTGCAATGTACAAGTTGTCAGAAGTAACAATGAAGAGAATGTAAATGTGGGTCAACCTACTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGCTAATTTCCCCTTTGCTGAGGGTAATCCTTTCACTGCCACATTATGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACATCTTTTGCTTATAGGGAGAAACTTGAACCATGGTTAGTCAGCAACATTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAGTCCTGGCTAAAGGTTTACCTGTTACTGAAGATAATGATATAGTTGTTGATGTTGAGAAACTGAGGGCTCCTTCTATCCCCAGAAAAAGGCTTGTTTTGTTGATCGGAGTATTCTCTACTGGAAATAACTTTGAGCGTCGAATGGCCTTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGAGAAGTTGCTGTTCGATTTTTTATTGGACTTCACAAGAAAATGGTGACTGGTGAATACTGA 1398 0.4013 MLVQCSLFGRKRLYLVQGLLKMKKWYGGLLIMALGMMLFLLYSLKGIQPQKQSTKQSAYNFFNNHSTDDSIKGSRNLSVNSSEMELKRVLPKPTKKPHLVHVAGLDDLFHMKNLSEGEMNPVLLWTSLRSLLSRSDALPETAQGVKEASVAWKDLLSTVEKDKASKISKIDSPENQNCPFSVTTLGKTVADSGITVDIPCGLVVDSSITLIGIPNGKNRSFQIDLVGQELEEEPNPPIILHYNVSLPGENMTEEPYIVQNTWTSDFGWGKEERCPARGSANIQKVDGLVLCNVQVVRSNNEENVNVGQPTSDIPSNISSESAHRTANFPFAEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSNIKVAGSLSLLSVLAKGLPVTEDNDIVVDVEKLRAPSIPRKRLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKKMVTGEY. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00474 465 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 194 387 IPR001079 GO:0030246
Seca12g00474 465 SMART Gal_bind_lectin_2 198 386 IPR001079 GO:0030246
Seca12g00474 465 SMART galectin_3 192 387 IPR001079 GO:0030246
Seca12g00474 465 Gene3D - 192 386 - -
Seca12g00474 465 PANTHER GALECTIN 158 385 IPR044156 -
Seca12g00474 465 Pfam Galactoside-binding lectin 195 385 IPR001079 GO:0030246
Seca12g00474 465 CDD GLECT 195 384 IPR001079 GO:0030246
Seca12g00474 465 SUPERFAMILY Concanavalin A-like lectins/glucanases 195 387 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00474 Seca-Chr12 4134669 4138667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00474 22 458 Glycosyltransferase AT1G26810 41.850 6.97e-107 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00474 K20843 - gmx:100816729 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00474 12 4134669 4138667 Seca12g00474 12 4134669 4138667 ECH
Seca12g00474 12 4134669 4138667 Seca10g01604 10 17639197 17642952 PCT