Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01604 ATGAAGAAGGGGAAGCTAGACCCGTTTGCTCTACCCAATAGGCTCACACTGCTTCAGATTTTCATGGTGGTGATGCTTCTCTACATGCTCTTCATGAGCTTTGAAATCCCTCTTGCTTTCAGAGCTGGGTTTGGCTCTGAAAATGGTGCTGTTGGGTTTCTCACCGACGCATTGCCTGTGCCGGTGCCACTGTTGCTAGAAGAAAACAACGAAATTCGATCCTTGGTGGAAGCTTCTGGGGTACCGAGAGGGTCACAGTTGCGGAAAGTTTCCACCTTGAGCTTCAATGAGAGCTTCTTCTCGGAGGTCTCTGAACTGCACAAGGTGGCGAGACACGCGTGGCTTGCGGGGAAGAAGCTTTGGGGGGAAGTGGAGAGTGGAAAAGTTGAGAGCTTTGCGAAGTTGAAGGTGGAAAACAATGGTTCGGACTCTTGCCCGCATTCCGTTACGCTTTCCGGGTTCGAGTTTCGGGAGAAGTTCAAGGGGGTGATGGTGTTGCCTTGTGGGTTGACCCTTTGGTCTCACGTGACCGTTGTTGGGACCCCACGTTGGGCTCATGCTGAGCGTGACCCCAAGATAGCGGTGGTGAAGGATGCGGATGAAGCAGTGATGGTGTCGCAGTTCATGTTGGAGTTGCAAGGGTTGAAGGCTGTGGACAAGGAGGAACCACCGCGGATACTGCATTTCAATCCGAGGCTGAGAGGGGATTGGAGTGGGAAGCCAGTGATTGAGCAGAACACTTGTTATAGGATGCAATGGGGTTCTGCTCTTAGGTGTGAGGGATGGAAGTCTCGTGCTGATGAGGAAACTGTTGATGGACATCTGAAATGTGAAAAGTGGATTCGAGACGATGATAATCGCTCGGAAGAGTGGAAGGCAACATGGTGGTTGAACAGACTGATAGGGCGAAAAAAGAAGGTGACTGTAGACTGGCCATATCCTTTTGCAGAGGGGAAATTGTTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGATGGGAGGCATGTGACATCATTTCCCTATCGCACAGGCTTTGCTCTTGAGGATGCTACTGGACTATCCATAAATGGGGACGTTGATGTGCATTCTATATTTGCTGCTTCCTTACCTGCATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAGTGGAAAGCTCCTCCTCTTCGCAATGTGAATGTGGAGCTTTTCATTGGCATCCTTTCTGCCGGCAACCATTTTGCTGAACGGATGGCACTGAGGAAGTCCTGGATGCAACATAAGCTCATCAGATCTTCACATGTTGTGGCTCGGTTTTTTGTAGCCTTGCATGCAAGGAAGGATATGAATGTGGACATTAAGAAAGAAGCAGAGTATTTTGGTGATATTATTATTGTCCCATACATGGATCATTATGACCTTGTCGTGTTGAAGACCATAGCTATCTGTGAATATGGGATTCACACAGTGGCTGCTAAGTATATCATGAAGTGTGATGATGACACATTTGTCAGAGTGGATACTATCATAAGCGAAGCAAGACAAGTTCAAAGTGATAAAAGTCTTTACATGGGAAATATGAATTACCACCATAGACCTCTTCGCCATGGGAAGTGGGCTGTAACTTACGAGGAATGGGTAGAGGAAGAGTATCCCACTTATGCTAATGGTCCAGGTTACATAGTCTCATCTGACATTGCTCACTTCATTGTGTCTGAATTTGAGAAGCGCAGATTGAAAGTATGTCTACAATTCATCTTTCATCTCCATCTGTTCCTATTCTTTCTGTCAATCAATTTCAATGTGGTGCAGTTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAGCTCAAGATCAGTAGAGTATGTGCACAGTGTGAAGTTCTGTCAATTTGGTTGCATTGAAGATTACTACACTGCGCATTACCAATCACCACGACAAATGACCTGCATGTGGGATAAATTGCAACATCAGGGGAAACCACTCTGTTGCAACATGAGATGA 2028 0.466 MKKGKLDPFALPNRLTLLQIFMVVMLLYMLFMSFEIPLAFRAGFGSENGAVGFLTDALPVPVPLLLEENNEIRSLVEASGVPRGSQLRKVSTLSFNESFFSEVSELHKVARHAWLAGKKLWGEVESGKVESFAKLKVENNGSDSCPHSVTLSGFEFREKFKGVMVLPCGLTLWSHVTVVGTPRWAHAERDPKIAVVKDADEAVMVSQFMLELQGLKAVDKEEPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRADEETVDGHLKCEKWIRDDDNRSEEWKATWWLNRLIGRKKKVTVDWPYPFAEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIFAASLPASHPSFAPQMHLELLPQWKAPPLRNVNVELFIGILSAGNHFAERMALRKSWMQHKLIRSSHVVARFFVALHARKDMNVDIKKEAEYFGDIIIVPYMDHYDLVVLKTIAICEYGIHTVAAKYIMKCDDDTFVRVDTIISEARQVQSDKSLYMGNMNYHHRPLRHGKWAVTYEEWVEEEYPTYANGPGYIVSSDIAHFIVSEFEKRRLKVCLQFIFHLHLFLFFLSINFNVVQLFKMEDVSMGMWVEQFNSSRSVEYVHSVKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQHQGKPLCCNMR. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01604 675 SMART Gal_bind_lectin_2 166 371 IPR001079 GO:0030246
Seca10g01604 675 Pfam Galactosyltransferase 418 579 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca10g01604 675 Gene3D - 397 660 - -
Seca10g01604 675 Pfam Galactoside-binding lectin 163 370 IPR001079 GO:0030246
Seca10g01604 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 164 370 IPR013320 -
Seca10g01604 675 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 162 372 IPR001079 GO:0030246
Seca10g01604 675 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 340 624 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca10g01604 675 FunFam Hydroxyproline O-galactosyltransferase GALT2 286 370 - -
Seca10g01604 675 Gene3D - 195 370 - -
Seca10g01604 675 FunFam Hydroxyproline O-galactosyltransferase GALT4 161 279 - -
Seca10g01604 675 CDD GLECT 166 370 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01604 Seca-Chr10 17639197 17642952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01604 2 675 Glycosyltransferase AT1G74800 57.550 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01604 K20843 - gmx:100803219 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01604 10 17639197 17642952 Seca10g01604 10 17639197 17642952 ECH
Seca12g00474 12 4134669 4138667 Seca10g01604 10 17639197 17642952 PCT