Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00180 ATGTTATCAAGTAAGCCAAGAAACTCAGGGACAGTTGAATCAACTCCAAGGAAAAAATGTTTCATGGTTATAGGGATCAATACAGCTTTTAGTAGCAGGAAGCGAAGGGATTCTGTTCGTGCAACTTGGATGCCACAAGCTGAGGAAAGAAAGAAGTTGGAGGAAGAAAAGGGCATAATCATACGTTTTGTTATAGGTCACAGGTCAGATTCAATGCTTCTTGATAATCACTGTCCTTTCTTGATGTGCTTAACTATTTCTACATCTGGTGGCATTCTTGACAAAGCTATTGAAGCAGAGGAGAAGCTTCATGCTGACTTTTTGAGGCTGTTTGTTGATGAAACAAAAACATCCATGTTTAAGCAGAACCACGTTGAGGGTTACATGGAACTATCAGCTAAGACAAAAACCTACTTTTCAACTGCTGTTGCCTTGTGGGATGCAGAATTTTATGTCAAAGTTGATGATGATGTTCATGTGAATTTAGCAACACTTGGATTGACTCTGAGTATGCACCGTCTGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCAGTCCTTGCTCAGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGCGAGGTGGGAAACAAGTACTTTCGTCATGCTACAGGACAATTATATGCCATTTCACAGGATTTGGCTACTTATATATCAATAAATCAGGACGTGCTGCATAAATATGCTAATGAAGATGTTTCATTGGGCTCCTGGTTTATTGGTTTAGATGTGGATCATGTTGATGACAGGAGGATGTGTTGTGGCACACCCCATTGCGAGTGGAAGGCTCAGGCAGGTAATATCTGTGTTGCTTCATTTGATTGGAAATGCAGCGGGATTTGCAGGTCTGTTGAGAGGATGAAGGAAGTTCACCAGCGTTGTGGGGAGGATGAAAATGCATTGTGGACTGCAACTTTTTGA 954 0.4161 MLSSKPRNSGTVESTPRKKCFMVIGINTAFSSRKRRDSVRATWMPQAEERKKLEEEKGIIIRFVIGHRSDSMLLDNHCPFLMCLTISTSGGILDKAIEAEEKLHADFLRLFVDETKTSMFKQNHVEGYMELSAKTKTYFSTAVALWDAEFYVKVDDDVHVNLATLGLTLSMHRLKPRVYIGCMKSGPVLAQGVKYHEPEYWKFGEVGNKYFRHATGQLYAISQDLATYISINQDVLHKYANEDVSLGSWFIGLDVDHVDDRRMCCGTPHCEWKAQAGNICVASFDWKCSGICRSVERMKEVHQRCGEDENALWTATF. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00180 317 FunFam Hexosyltransferase 14 264 - -
Seca12g00180 317 Pfam Galactosyltransferase 90 260 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca12g00180 317 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 15 264 IPR002659 GO:0006486|GO:0016020|GO:0016758
Seca12g00180 317 Gene3D - 12 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00180 Seca-Chr12 1666582 1672374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00180 10 317 Glycosyltransferase AT1G05170 71.613 9.92e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00180 K20855 - gmx:100810168 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00180 12 1666582 1672374 Seca12g00180 12 1666582 1672374 ECH
Seca4g05191 4 96979909 96983957 Seca12g00180 12 1666582 1672374 ECH