Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00119 ATGAAGAGCCTCTTCAAGTCCAAGCCCCGCACTCCCGCCGACATTGTTCGCCAAACCAGAGATCTTCTACGCCTCCTCCAACAACACTCTCCCGACACCAAACGCGATGACAAGCAGATGACCGAGTTGTCTAAAAATATCAGGGAGCTAAAGACAATCCTTTATGGAAATAGTGAATCCGAACCAGTCCCTGAAGCCTGTGCGCAGTTGACTCAGGAGTTCTTCAACGATAACACTCTGCGACTCCTTGTCCAATGTCTTCCAAAATTGAACCTGGAGGCTAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCTAGGCTGATTGCGTCTGATTACTTGGAGAAAAATATGGATCTTATGGATATTTTGGTATCTGGTTACGAAAACACAGACATGGCTTTACACTATGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAATATGTTCTGGACTCGCCTCATATGAAGAAGTTTTTTGACTACATTCAACTTCCAAATTTCGACATAGCTGCAGATGCCGCAGCAACTTTTAAGGAACTCATGACAAGACATAAATCTACTGTAGCTGAATTCCTTTCTAAGAATTTTGAATGGTTTTTTGATGAATATAACTCTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGTCAAGCTGTCAAGTTGTTGGGAGATATGTTACTTGATCGCTCAAATTCAGCTGTAATGACAAGATATGTCAGCTCAAGAGACAACTTAAGAATTTTAATGAATCTTCTGAGAGAGTCAAGCAAGAGCATCCAGATAGAAGCATTTCATGTTTTCAAGCTATTTGCTGCTAACCAAAATAAACCAGCTGATATCATCGGCATACTTGTCGCAAACAGAGGCAAACTTCTGAGACTATTGGGTGACTTAAAAATCGATAAAGAGGATGAACAGTTTGAAGCTGATAAAGCTCAGGTTATGAAGGAAAGCTGTGATGTGCAGGTTGATTTGGTCACTGAAACTGATAAGGCATGTGAAGACCTCATATTTAATCACCTCAAGCAGCTTTACCCCACTCATAAGTTCATTGGCGAAGAAACCACAGCTGCTTTTGGTGCTACTGAACTTACAGATGAACCCACATGGATAGTTGATCCTCTGGATGGAACTACTAATTTTGTGCACGGGTTCCCCTTTGTTTGTGTGTCTATTGGTCTTACAATTAGAAAAATTCCTACCGTCGGTGTTGTTTACAACCCAATACTTAATGAGCTTTTCACTGGAATTCGTGGGAAAGGTGCTTTTTTAAATGGGAACCCTATAAAAGTATCATCAAAAACTGAACTAATAAGCTCTCTTCTTGTACATGAGGCTGGAACAAAACGTGATAACTTAACAGTCGATGCCTTTACAAAAAGGGTTAATAGCTTGCTTTTCAAGGTGAGATCCCTTAGAATGACCGGCTCCTCCGCTTTGAACCTTTGCGGAATTGCGTGTGGAAGGCTGGATATATACTTCCAATATGGCTTTGGAGGTGCTTGGGATGTAGCAGGTGGAGCTGTCATTGTTAGAGAAGCTGGAGGTGTTGTATATGATCCGTCTGGTGCAGATTTTGACATCACATCTCAGCGCGTAGCTGCTTCCAATCCTTCGTTGAAGGATGCTCTTCTTGATGTTCTGCGCCAAATTGAGTGA 1695 0.4177 MKSLFKSKPRTPADIVRQTRDLLRLLQQHSPDTKRDDKQMTELSKNIRELKTILYGNSESEPVPEACAQLTQEFFNDNTLRLLVQCLPKLNLEARKDATQVVANLQRQQVQSRLIASDYLEKNMDLMDILVSGYENTDMALHYGAMLRECIRHQIVAKYVLDSPHMKKFFDYIQLPNFDIAADAAATFKELMTRHKSTVAEFLSKNFEWFFDEYNSKLLESSNYITRRQAVKLLGDMLLDRSNSAVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIIGILVANRGKLLRLLGDLKIDKEDEQFEADKAQVMKESCDVQVDLVTETDKACEDLIFNHLKQLYPTHKFIGEETTAAFGATELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIRKIPTVGVVYNPILNELFTGIRGKGAFLNGNPIKVSSKTELISSLLVHEAGTKRDNLTVDAFTKRVNSLLFKVRSLRMTGSSALNLCGIACGRLDIYFQYGFGGAWDVAGGAVIVREAGGVVYDPSGADFDITSQRVAASNPSLKDALLDVLRQIE. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00119 564 FunFam putative MO25-like protein At5g47540 3 333 - -
Seca12g00119 564 SUPERFAMILY Carbohydrate phosphatase 335 562 - -
Seca12g00119 564 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 1 330 IPR013878 -
Seca12g00119 564 SUPERFAMILY ARM repeat 10 329 IPR016024 -
Seca12g00119 564 Gene3D - 2 331 IPR011989 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 511 535 IPR000760 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 358 374 IPR000760 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 431 454 IPR000760 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 479 500 IPR000760 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 382 398 IPR000760 -
Seca12g00119 564 PRINTS Inositol monophosphatase superfamily signature 336 356 IPR000760 -
Seca12g00119 564 CDD IMPase 317 549 IPR033942 GO:0008934
Seca12g00119 564 Gene3D - 370 444 - -
Seca12g00119 564 Pfam Inositol monophosphatase family 319 562 IPR000760 -
Seca12g00119 564 FunFam Inositol-1-monophosphatase 310 440 - -
Seca12g00119 564 FunFam Inositol-1-monophosphatase 442 564 - -
Seca12g00119 564 ProSitePatterns Inositol monophosphatase family signature 1. 382 395 IPR020583 -
Seca12g00119 564 ProSitePatterns Inositol monophosphatase family signature 2. 514 528 IPR020550 GO:0046854
Seca12g00119 564 Gene3D - 445 564 - -
Seca12g00119 564 Pfam Mo25-like 4 329 IPR013878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00119 Seca-Chr12 1143204 1154190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00119 K08272 - gmx:100788031 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00119 12 1143204 1154190 Seca6g04381 6 111408479 111413199 PCT