Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05025 ATGTTAAGGGTTGCAGCTAGGAGGCTTTCTTCTCTCTCCTCCTCTCCCTTGAGGCCCAACCATGCCGCTTCCGCCTACCTCTCTCGTAACTCCGTCGTCGATGACCGCAGATCTACTCCTTCCTCCGACCTTCCTCATTTCCTTCTCCCCTTCAGAGGTTTTGTCTCTGAATCACTGATCCACACAAAAGAAAACAGCATTATTCATGAGATTCCAGCAACTGTTGCTGCTGTTAAGAACCCTACTTCTAAGATTGTTTATGATGAGCACAACCATGAACGATTTCCCCCTGGTGACCCAAGCAAGAGGGCATTTGCATACTTTGTCCTTACAGGTGGTAGATTTGTTTATGCCTCTCTGGTACGTCTTCTTGTACTCAAGTTTGTGCTCAGCATGTCTGCCAGTAAGGATGTTCTTGCCCTGGCTTCACTTGAGGTTGATCTCTCCAGCATTGAGCCCGGCACTACGGTAACAGTTAAGTGGCGTGGAAAGCCAGTGTTCATAAGGCGCCGAACGGAGGATGATATTCAGCTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGATCCACAACCGGATTCAGATAGAGTCAAGGACCCAGAATGGCTCATTGTGATTGGGGTTTGCACACATCTAGGTTGCATTCCATTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGATCACATTATGATATCTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATCTGGAGGTTCCCACTTATACCTTCTTGGATGAAAACAAGTTGATGATTGGTTGA 801 0.4744 MLRVAARRLSSLSSSPLRPNHAASAYLSRNSVVDDRRSTPSSDLPHFLLPFRGFVSESLIHTKENSIIHEIPATVAAVKNPTSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIQLANSVDVGSLRDPQPDSDRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLMIG. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05025 266 Pfam Rieske [2Fe-2S] domain 149 252 IPR017941 GO:0051537
Seca10g05025 266 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 73 266 IPR014349 GO:0051537
Seca10g05025 266 CDD Rieske_cytochrome_bc1 143 266 - -
Seca10g05025 266 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 136 266 - -
Seca10g05025 266 Gene3D - 135 266 IPR036922 GO:0051537
Seca10g05025 266 Pfam Ubiquinol cytochrome reductase transmembrane region 93 137 IPR004192 GO:0008121
Seca10g05025 266 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 176 264 IPR017941 GO:0051537
Seca10g05025 266 SUPERFAMILY ISP transmembrane anchor 83 139 - -
Seca10g05025 266 SUPERFAMILY ISP domain 128 263 IPR036922 GO:0051537
Seca10g05025 266 PRINTS Rieske 2Fe-2S subunit signature 204 215 IPR005805 GO:0016020|GO:0051537
Seca10g05025 266 PRINTS Rieske 2Fe-2S subunit signature 238 250 IPR005805 GO:0016020|GO:0051537
Seca10g05025 266 PRINTS Rieske 2Fe-2S subunit signature 226 238 IPR005805 GO:0016020|GO:0051537
Seca10g05025 266 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 116 266 IPR006317 GO:0008121
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05025 Seca-Chr10 115737361 115745593 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05025 K00411 - gmx:100799135 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05025 10 115737361 115745593 Seca10g05025 10 115737361 115745593 ECH
Seca10g05025 10 115737361 115745593 Seca2g03388 2 104616372 104619115 PCT