Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02908 ATGTCGACCACTTCCATTAACGGTTGGTGCCTTTCCTCCATTTCCTCTGCCAAAACCTCTCTCAAGAAGGCCACATTGCGCCCCTCTGTCTTTGCATCCCTTAGCTCTCCTCCTTCAACTTCTTCTTCTTCTTCCTTCCCTTCCCTTATCCAAGACAGGCCTGTTTTTGCTGCCCCTTCTCCTATCATCACCCCCACTTGGAACGAGGATATGGGAAAGAACTATGAGGAAGCTATTGAGGAACTCCAGAAATTGTTGAGGGAGAAGACAGAACTTAAGGCCACAGCAGCTGAAAAAGTTGAGCAGATAACAGCTCAGCTGGGGACAACATCATCTGATGGCATCCCAACATCTGAAGCCTCAGACAGGATCAAGTCTGGATTCCTTTACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAGAGCCCCAAGTTTATGGTGTTTGCATGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGACTTCCAGCCAGGAGAGGCTTTTGTGGTCAGAAATGTTGCTAACATTGTTCCACCATATGACCAGTCAAAATTCTCTGGATCTGGGGCTGCCATTGAGTATGCAGTTCTTCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTTCCATATGATGGAACCTACTCCACTTATGTGTGCAGTGATTTTATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCCAAGGTGAAAACACAGCATCCTGATGCACCTTTTGGAGACTTGTGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCCCTTGGAAACCTGCTAACCTACCCATTTGTTAGAGATGGCTTGGTGAACAAAACATTGGCACTGAAAGGAGGATACTATGACTTTGTTAAAGGATCTTTTGAGCTGTGGGGCCTTGAGTTTGGCCTTTCTTCCTCTTTCTCCGTATGA 999 0.4595 MSTTSINGWCLSSISSAKTSLKKATLRPSVFASLSSPPSTSSSSSFPSLIQDRPVFAAPSPIITPTWNEDMGKNYEEAIEELQKLLREKTELKATAAEKVEQITAQLGTTSSDGIPTSEASDRIKSGFLYFKKEKYDKNPALYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQSKFSGSGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPYDGTYSTYVCSDFIEEWVKIGLPAKAKVKTQHPDAPFGDLCTHCEKEAVNVSLGNLLTYPFVRDGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSSFSV. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02908 332 Coils Coil 68 102 - -
Seca10g02908 332 Pfam Carbonic anhydrase 155 316 IPR001765 GO:0004089|GO:0008270
Seca10g02908 332 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 203 223 IPR015892 GO:0004089|GO:0008270|GO:0015976
Seca10g02908 332 PANTHER CARBONIC ANHYDRASE 83 323 IPR001765 GO:0004089|GO:0008270
Seca10g02908 332 Gene3D Carbonic anhydrase 108 332 IPR036874 GO:0004089|GO:0008270
Seca10g02908 332 CDD beta_CA_cladeB 127 320 IPR045066 GO:0004089|GO:0008270
Seca10g02908 332 FunFam Carbonic anhydrase 109 332 - -
Seca10g02908 332 SMART Pro_CA_2 147 321 IPR001765 GO:0004089|GO:0008270
Seca10g02908 332 SUPERFAMILY beta-carbonic anhydrase, cab 113 325 IPR036874 GO:0004089|GO:0008270
Seca10g02908 332 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 159 166 IPR015892 GO:0004089|GO:0008270|GO:0015976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02908 Seca-Chr10 38655220 38659396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02908 K01673 - gmx:100500448 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02908 10 38655220 38659396 Seca10g02908 10 38655220 38659396 ECH
Seca10g02908 10 38655220 38659396 Seca12g03664 12 93611237 93612931 PCT