Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02183 ATGGCATCCCATATTGTTGGATATCCTCGCATGGGCCCCAAGAGAGAGCTCAAGTTCGCTCTCGAGTCATTCTGGGATGGGAAGAGCAGTGCTGATGATTTGAAGAAGGTTGCTGCTGATCTCAGGGCATCCATCTGGAAGCAGATGACTGATGCTGGGATCAAGTACATCCCCAGCAACACTTTCTCCTACTATGATCAGGTGCTTGATGCCACCGCCATGCTTGGTGCTGTTCCACCAAGATATGGGTGGACTGGCGGGGAGATTGGATTTGATACCTACTTCTCCATGGCCAGGGGTAATGCCTCTGTGCCTGCAATGGAAATGACCAAGTGGTTTGACACCAACTACCACTTTATTGTCCCTGAGCTGGGACCTGATGTGAATTTCACTTATGCTTCCCACAAGGCAGTGGATGAGTACAAGGAAGCCAAGGCGCTTGGAGTAGATACAGTTCCAGTCCTCATTGGCCCTGTATCATACTTGGTGCTCTCCAAACCAGCCAAGGGTGCTGATAAATCATTTTCTCTTCTTTCTCTCCTCCCAAAAGTCCTTGCTGTCTACAAGGAAGTTGTAGCTGATCTTAAGGCAGCTGGTGCTTCTTGGATTCAATTTGATGAACCTACCCTTGTCTTGGACCTTGACTCTCACCAGTTGCAAGCATTTACTGCAGCATACTCGGATCTTGCATCAACTTTATCTGGTTTAAATGTTCTTATTGAGACCTACTTTGCTGATGTTCCTGCTGAGGCATTCAAGACCCTCACAGCTCTGGATGGCATCACAGCATTCGGATTTGATTTAGTCCGTGGAACTAAGACTCTTGATTTGATCAAGGGTGGATTTCCCAGTGGAAAATACCTTTTCGCTGGAGTGGTTGATGGAAGAAACATTTGGGCTAATGATCTTGCTACTTCTCTCAGTACATTAAATAGTCTTGAGGGCATTGTGGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACTGCTGTTGATCTTGTCAATGAGACCAAGTTGGATAACGAGATAAAATCATGGCTGGCTTTTGCTGCCCAAAAAATTGTTGAAGTAAATGCATTGGCCAAGGCATTGTCTGGCCAAAAGGATGAGGCCTTCTTCTCTTCAAATGCTGCAGCTCAGGCTTCAAGGAAGTCCTCTCCTAGAGTGACTAATGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAAGGTTCTGACCATCGCCGTGCCACAAATGTTAGCGCCAGACTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTCCCAACCACCACTATTGGGTCCTTCCCTCAGACTGTTGAATTGAGGAGGGTGCGTCGTGAATACAAGGCTAACAAGATCTCCGAGGAAGAGTATGTTAAGGCAATTACAGAGGAAATCCGCAAAGTTGTTGAACTCCAAGAACAGCTTGATATTGATGTCCTGGTACATGGGGAGCCTGAGAGGAATGATATGGTTGAATACTTCGGTGAGCAGTTGTCAGGATTCGCCTTTACTGTTAATGGGTGGGTGCAATCTTATGGATCTCGCTGTGTGAAGCCACCAATCATCTATGGTGATGTAAGCCGGCCAAAGCCAATGACTGTCTTCTGGTCATCTACTGCTCAGAACATGACCAAACGCCCAATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCTTTTGTTCGAAATGACCAACCTAGATCTGAGACTACCTATCAGATTGCTTTGGCTATCAAGGACGAAGTAGAAGATCTTGAAAAGGCTGGTATTACTGTTATCCAAATTGATGAGGCTGCTTTGAGAGAAGGGTTGCCATTGAGGAAGTCAGAGCAAGCTGACTACTTGAACTGGGCTGTCCATTCCTTCAGGATCACCAATGTTGGTGTGCAGGATTCTACTCAGATCCACACCCACATGTGCTACTCTAACTTCAATGACATCATCCAATCAATCATTGATATGGATGCTGATGTGATCACCATTGAGAACTCTCGTTCTGATGAAAAGCTCCTGTCAGTCTTCCGTGAAGGAGTTAAGTATGGAGCTGGAATTGGCCCTGGAGTTTATGACATTCACTCCCCCAGAATACCACCAACTGAAGAAATTGCTGACAGGATCAACAAGATGCTTGCAGTGCTTGAGAAAAACATTTTGTGGGTCAACCCTGATTGTGGACTCAAGACTCGCAAGTACACCGAGGTGAATCCAGCCCTCACAAACATGGTTGCTGCTACAAAAGTCATCCGTAACCAGCTTGCCGGTGGCAAGTGA 2298 0.4648 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLKKVAADLRASIWKQMTDAGIKYIPSNTFSYYDQVLDATAMLGAVPPRYGWTGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVNFTYASHKAVDEYKEAKALGVDTVPVLIGPVSYLVLSKPAKGADKSFSLLSLLPKVLAVYKEVVADLKAAGASWIQFDEPTLVLDLDSHQLQAFTAAYSDLASTLSGLNVLIETYFADVPAEAFKTLTALDGITAFGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLATSLSTLNSLEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKIVEVNALAKALSGQKDEAFFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKANKISEEEYVKAITEEIRKVVELQEQLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQNMTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQADYLNWAVHSFRITNVGVQDSTQIHTHMCYSNFNDIIQSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVNPALTNMVAATKVIRNQLAGGK. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02183 765 CDD CIMS_N_terminal_like 3 367 - -
Seca10g02183 765 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Seca10g02183 765 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Seca10g02183 765 SUPERFAMILY UROD/MetE-like 397 759 IPR038071 -
Seca10g02183 765 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Seca10g02183 765 Gene3D - 5 525 IPR038071 -
Seca10g02183 765 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 395 758 - -
Seca10g02183 765 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 762 - -
Seca10g02183 765 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Seca10g02183 765 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Seca10g02183 765 PIRSF Met_synth_MetE 1 764 IPR006276 GO:0003871|GO:0008270|GO:0009086
Seca10g02183 765 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Seca10g02183 765 Gene3D - 390 758 IPR038071 -
Seca10g02183 765 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02183 Seca-Chr10 25023309 25028454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02183 K00549 - gmx:100811317 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02183 10 25023309 25028454 Seca10g02183 10 25023309 25028454 ECH
Seca10g02183 10 25023309 25028454 Seca6g03355 6 100621598 100623553 PCT