LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g01305	ATGGCGGATGAGAGGAGGTTTCGCATAGGGTACGCGCTTGCGCCGAAGAAGCGGAACAGCTTCATCAGGGACTCGCTGGTGAGCCTCGCGAGATCTCGCGGGATAGACCTTGTTCGGGTCGACCCGAACCGGCCATTGTCGGATCAGGGCCCATTCGATTGCGTCCTACACAAGCTCTACGACGACGATTGGAAACGACAGTTGAAGGAGTTCACGGAGAAGTACCCGAATGCGGTGGTGCTCGACTCTCCGGAAGCGATTGAGAGGCTCCACAACCGGATTTCCATGCTGCAGGTGGTGTCGGAGCTGGAAATCGACGACACTAACGCGACCTTTGGGATTCCAAAGCAGATTGTCGTGCACGACAGGGAAACTCTCTCCGATCACCGGAACTGGGAGGAGCTGAAGTTTCCGGTGATTGCGAAGCCGTTGGTGGCCGACGGTAGCGCCAAGTCGCACAAAATGGCGCTCGTTTTCAACCGCGACGCATTGAACAAGCTGAAGCCGCCGATTGTGCTGCAGGAGTTCGTGAACCACGGAGGCGTCATCTTTAAGGTGTACGTGGTTGGGGAGCACGTGAAGTGCGTGAAGAGGAAGTCCTTGCCGGATGTTGAAGAGGACAAGTTGGTGGGGGTTTCAGAGAATTTGTTGTCGTTCTCACAGGTGTCGAATTTGGCAACCAATGAGAGGATTGATGATAAGTATTATAAGATGATGCATTTGGATGACGCGGAAATGCCACCCCTGAGCTTCATTACTCAAATAGCTAGGGGTTTGAGGCATGTGATGAAGCTGAACCTGTTTAACTTCGACATGATTCGGGACTCTAGATGTGGGAATCGGTACCTTATCATTGATATCAATTACTTCCCTGGGTATGCCAAAATTCCCGGTTATGAGACTATTTTGACAGACTTTTTCTGTGATGTGTTGTGCAAGAAACAGCAAGGAGGTGTTGTGTCAGGGAGTCTGGGCGAGAAGGAATGTTCGAATCTGATGCAAGGCTATGACAAAGATACGAGAAAGATTCTAAGCAACACTTGTGGTGATGGGGATGAGGGTAGCCTTCAAGTTTCGCCTCTTGGCATGGAAGAGAAAGAGAGTTCTGTTCAAGTATGA	1119	0.5094	MADERRFRIGYALAPKKRNSFIRDSLVSLARSRGIDLVRVDPNRPLSDQGPFDCVLHKLYDDDWKRQLKEFTEKYPNAVVLDSPEAIERLHNRISMLQVVSELEIDDTNATFGIPKQIVVHDRETLSDHRNWEELKFPVIAKPLVADGSAKSHKMALVFNRDALNKLKPPIVLQEFVNHGGVIFKVYVVGEHVKCVKRKSLPDVEEDKLVGVSENLLSFSQVSNLATNERIDDKYYKMMHLDDAEMPPLSFITQIARGLRHVMKLNLFNFDMIRDSRCGNRYLIIDINYFPGYAKIPGYETILTDFFCDVLCKKQQGGVVSGSLGEKECSNLMQGYDKDTRKILSNTCGDGDEGSLQVSPLGMEEKESSVQV.	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g01305	372	MobiDBLite	consensus disorder prediction	347	372	-	-
	Seca10g01305	372	FunFam	Inositol-tetrakisphosphate 1-kinase	83	292	-	-
	Seca10g01305	372	PIRSF	ITPK	1	322	IPR008656	GO:0000287\|GO:0005524\|GO:0032957\|GO:0047325\|GO:0052725\|GO:0052726
	Seca10g01305	372	SUPERFAMILY	Glutathione synthetase ATP-binding domain-like	82	294	-	-
	Seca10g01305	372	Gene3D	-	85	292	-	-
	Seca10g01305	372	Pfam	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain	108	308	IPR040464	-
	Seca10g01305	372	Pfam	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	8	87	IPR041429	-
	Seca10g01305	372	PANTHER	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	3	315	IPR008656	GO:0000287\|GO:0005524\|GO:0032957\|GO:0047325\|GO:0052725\|GO:0052726

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g01305	Seca-Chr10	13087336	13088454	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g01305	K00913		-	gmx:100794373	563.533

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca10g01305	10	13087336	13088454	Seca10g01305	10	13087336	13088454	ECH
	Seca10g01305	10	13087336	13088454	Seca12g03639	12	92809710	92810759	PCT