Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00389 ATGGGTTTAGCAGCTAACGGCAGCGGCGATGAGAAGCAACTCAAGTTTCTGATCTACGGTCGGACCGGCTGGATTGGCGGTCTGTTGGGGAAACTCTGCCAAGAGAAAGGCATCCAATATGTTTACGGCGACGGCAGGTTGGAGAACCGGTCCTCATTGGAAGCGGACATATCGGCGGTGAATCCCAGCCACGTGTTCAACGCCGCTGGGGTGACGGGTAGACCCAATGTGGACTGGTGCGAATCTCACAAGGTCGAAACCATCCGAACAAACGTGGCAGGCACTCTCACCTTGGCTGACGTGTGCCGCCAGAGAGGCCTTATCCTCATCAATTACGCCACCGGCTGCATCTTCGAGTATGACCCCTCCCACCCCATCGGATCCGGCATCGGATTCTTGGAACACGACACTCCCAATTTCACCGGATCCTTCTATTCCAAGACCAAGGCCATGCAGGTGGAAGATCTGCTCCAGAACTATGACAATGTGTGTACCTTGCGAGTGAGGATGCCCATCTCCTCTGATTTGTCCAACCCTCGCAATTTCATTACTAAGATCACTCGTTATGACAAAGTTGTCAATATTCCCAACTCAATGACTATATTGGATGAACTCCTTCCCCTCTCCATTGAGATGGCGAAGAGGAATCTCACTGGGATCTGGAATTTCACTAACCCTGGAGTGGTCAGTCACAATGAAATTTTAGACATGTATAGGGAATATGTGGATCCCAAATTTACATGGAAGAACTTCACCCTTGAGGAGCAGGCTAAAGTAATCGTTGCCCCGAGAAGCAACAATGAGCTCGACGCATCTAAGTTAAAGAAAGAGTTCCCTCAACTCTTGTCTATCAAGGATTCCCTCATAAAGTATGTATTCTAG 882 0.4955 MGLAANGSGDEKQLKFLIYGRTGWIGGLLGKLCQEKGIQYVYGDGRLENRSSLEADISAVNPSHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADVCRQRGLILINYATGCIFEYDPSHPIGSGIGFLEHDTPNFTGSFYSKTKAMQVEDLLQNYDNVCTLRVRMPISSDLSNPRNFITKITRYDKVVNIPNSMTILDELLPLSIEMAKRNLTGIWNFTNPGVVSHNEILDMYREYVDPKFTWKNFTLEEQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVF. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00389 293 Pfam RmlD substrate binding domain 15 188 IPR029903 -
Seca10g00389 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 288 IPR036291 -
Seca10g00389 293 Gene3D - 4 293 - -
Seca10g00389 293 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 5 293 - -
Seca10g00389 293 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 13 293 IPR005913 -
Seca10g00389 293 CDD dTDP_HR_like_SDR_e 15 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00389 Seca-Chr10 3419860 3421362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00389 K12451 - ini:109152989 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00389 10 3419860 3421362 Seca10g00389 10 3419860 3421362 ECH
Seca10g00389 10 3419860 3421362 Seca12g01829 12 20916034 20917449 PCT