Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00052 ATGAAGGAACAAGATTTACATTGGAGATGGTCAGTGAGTCTGTTTGTAGCTGTAGGGTTCGTGTTGATGCATGTGTCAATGGGGAGATTCGTGGTGGAAAAGAACAGCTTGTCGGTGACGTCACCGGAGAAAATCAAAGGGAAACACGATAGTGCCATCGGCAACTTCGGGATTCCTCAATACGGAGGTAGCATGGCCGGGAACGTGCTTTACCCAAAGGATAACAAACAAGGTTGTAAAGAGTTTGATGACTCCTTCAAGTCACGCCCTGGTGCTATTCCCACCATCCTTTTACTCGATCGCGGAAATTGCTTCTTTGCTTTGAAGGTCTGGAATGCTCAGAAGGCTGGGGCTTCTGCGGTTCTTGTTGCAGATGATATTGAGGAACCCTTAATAACTATGGACACACCAGAAGAGGATGGATCATCTGCGAATTACATTGAGAACATAACAATACCCTCTGCTCTCATTGAAAAAAGTTTTGGTGAAAAATTAAAGGATGCCGTGAGTGGTGGGGAAATGGTCAATGTAAATCTTGATTGGAGAGAGGCTGTTCCACACCCTGATGATCGTGTGGAGTATGAATTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTCTTAAGGATTTCAAGGGTGCAGCACAGATACTAGAGAAAGGTGGTTACACTCAGTTTACACCCCATTATATAACTTGGTATTGTCCTCACGCTTTCACGTTAAGTAAACAGTGTAAGTCCCAATGCATAAACCATGGAAGATATTGTGCTCCAGATCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTCGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCGATGAAGGAGAAAAAGTACAATAAGGAATGTGCAAATGCTGTTATAAAATCACTGGGTCTTGATATGGAAAAGATTGAAAAGTGCATGGGAGATCCAGATGATGATACTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATTTGTTCTGGATTTGAAGAAACTACTGAGCCAGCTGTTTGTTTAAGCACTGATGTGGAGACAAATGAGTGCTTGACGAACAATGGTGGTTGTTGGCATGATAAAGCTTCTAACATCACTGCATGCAAGGATACATTCCGTGGACGAGTATGTGAATGTCCCCTGGTTGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACCTGTGAAGTCAGTGGACCTGGGCGTTGCAAGATTAACAATGGAGGTTGTTGGCATGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATAATGGAGGGGTTAAATGCCAGTGTCCTACAGGGTTTAGAGGTGATGGTGTCAAAAATTGTGAAGATATTGATGAATGCAAAGAGAAGAAAGCTTGTCAATGCTCCCAATGTAGCTGCCAGAATACTTGGGGCAGCTATGATTGTAGTTGTAATGGAGGTCTTCTGTATATGAAAGACCATGATACCTGCATAAGTGAGTTGAATACACTAGATTTTTTTCACTTGCATCTACATTTGCATATTCTTGTTGTAATACTTGTATTCATGTCCCGTACTGGATGA 1770 0.422 MKEQDLHWRWSVSLFVAVGFVLMHVSMGRFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVLYPKDNKQGCKEFDDSFKSRPGAIPTILLLDRGNCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSANYIENITIPSALIEKSFGEKLKDAVSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKECANAVIKSLGLDMEKIEKCMGDPDDDTENPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSTDVETNECLTNNGGCWHDKASNITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVSGPGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFRGDGVKNCEDIDECKEKKACQCSQCSCQNTWGSYDCSCNGGLLYMKDHDTCISELNTLDFFHLHLHLHILVVILVFMSRTG. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00052 589 SUPERFAMILY PA domain 95 175 IPR046450 -
Seca10g00052 589 Gene3D Glutaredoxin 265 401 - -
Seca10g00052 589 Pfam PA domain 67 165 IPR003137 -
Seca10g00052 589 CDD EGF_CA 518 549 - -
Seca10g00052 589 Gene3D - 27 188 - -
Seca10g00052 589 FunFam vacuolar-sorting receptor 1 411 467 - -
Seca10g00052 589 SMART egfca_6 518 560 IPR001881 GO:0005509
Seca10g00052 589 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Seca10g00052 589 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Seca10g00052 589 Gene3D Laminin 411 467 - -
Seca10g00052 589 Gene3D Laminin 522 560 - -
Seca10g00052 589 CDD PA_VSR 55 179 - -
Seca10g00052 589 Gene3D Laminin 472 521 - -
Seca10g00052 589 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 11 566 - -
Seca10g00052 589 FunFam Vacuolar-sorting receptor 1 27 188 - -
Seca10g00052 589 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00052 Seca-Chr10 461852 465842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00052 28 562 Miscellaneous Gene Families AT2G14740 84.201 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00052 - - gmx:100820115 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00052 10 461852 465842 Seca10g00052 10 461852 465842 ECH
Seca10g00052 10 461852 465842 Seca8g07693 8 174234503 174240185 PCT