Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02519 ATGATTGGAAACGGTGGCAGCAAGAACCATCAACAGCCATTTGATATCTCCATTGACACGCTTCAACAAGGAGGTTCCAAGTGTTTTGATGATGATGGACGTCTCAAAAGAACTGGAACTGTGTGGACATCTAGTTCCCACATAATAACAGCTGTTATTGGTTCTGGGGTGTTATCTTTGGCTTGGGCTATAGCTCAGCTTGGTTGGATTGCTGGTCCTTCTGTGATGGTTCTCTTCTCTATAGTTACTTATTATACCTCCACTCTTCTCTGTGTTTGTTACCGTACTGGTGACCAACTCAATGGCAAGAGGAATTACACTTACATGGATGCTGTTCGATCATACCTTGGTGGAGTTAAGGTCAAGATTTGTGGGTGTGTTCAGTATGCTAACCTTTTTGGAGTTGCTATTGGGTACACTATAGCAGCTTCCATCAGCATGATGGCAATCAAAAGGTCCAATTGTTTCCACAGTAGTGGAGGGAAAAATCCATGCCATATGAATAGCAATGTTTACATGATTTCATTTGGTATTGTGGAAATTATTTTCTCCCAAATTCCAGATTTCCATGAATTATGGTGGCTCTCTATTCTAGCTGCTGTCATGTCCTTCACATACTCATTAATTGGGCTTGGCCTTGGTATTGGTAAAGTTATAGAAAACAAAAGTGTTAGAGGAGGCCTAACTGGTATAAATGTTGGTACTGTGACACAAACCCAAAAGGTTTGGAGGAGTTTCCAAGCTCTTGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATAGAAATTCAGGACACAATCAAATCGCCTCCAGCAGAGTCAAAAACAATGAAGAAGGCTACTTTTATCAGTTGTTTTGTCACAACCCTTTTCTATATGCTCTGTGGTTGCTTTGGCTATGCTGCTTTTGGAGACTCAAGCCCTGGAAACCTTCTCACTGGTTTTGGCTTCTACAATCCATATTGGCTCCTTGACATAGCAAATGCTGCCATTGTTATCCACCTTGTTGGTGCATACCAAGTTTACACCCAACCCCTTTTCTCATTTGTTGAGAAACTTGCAGCAGATAAATTCCCAAACAGTGATTTTATTAACAAAGACATTGAAGTACCTATCCCTGGCTTCAGACCCTTCAAACTCAACTTCTTCAGATTGGTTTGGAGGACATTTTTTGTGATCTTAACCACTGTAATATCCATGCTCCTCCCATTCTTCAATGACATTGTGGGACTTATTGGAGCTGTTGGATTTTGGCCTCTTACTGTATTTTTCCCAGTGGAGATGTATATAGCCAAAAATAAAATACCAAAGTGGAGCACAAAATGGATATGCCTTCACATGCTTAGTGTTGCTTGTCTTATAATTTCTTTAGCAGCTGCAGCAGGTTCTGTTGCTGGGATTGTTGTTGATCTTGGAGTTTACAAGCCATTCCGTACCAGCTACTAA 1452 0.4091 MIGNGGSKNHQQPFDISIDTLQQGGSKCFDDDGRLKRTGTVWTSSSHIITAVIGSGVLSLAWAIAQLGWIAGPSVMVLFSIVTYYTSTLLCVCYRTGDQLNGKRNYTYMDAVRSYLGGVKVKICGCVQYANLFGVAIGYTIAASISMMAIKRSNCFHSSGGKNPCHMNSNVYMISFGIVEIIFSQIPDFHELWWLSILAAVMSFTYSLIGLGLGIGKVIENKSVRGGLTGINVGTVTQTQKVWRSFQALGNIAFAYSYSMILIEIQDTIKSPPAESKTMKKATFISCFVTTLFYMLCGCFGYAAFGDSSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVYTQPLFSFVEKLAADKFPNSDFINKDIEVPIPGFRPFKLNFFRLVWRTFFVILTTVISMLLPFFNDIVGLIGAVGFWPLTVFFPVEMYIAKNKIPKWSTKWICLHMLSVACLIISLAAAAGSVAGIVVDLGVYKPFRTSY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02519 483 PANTHER OS05G0424000 PROTEIN-RELATED 40 466 - -
Rops9g02519 483 Pfam Transmembrane amino acid transporter protein 37 470 IPR013057 -
Rops9g02519 483 FunFam Amino acid permease 6 34 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02519 Rops-Chr9 47377507 47380080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02519 8 483 Organic Solute Cotransporters AT1G77380 74.370 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02519 K24917 - tcc:18592400 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02519 9 47377507 47380080 Rops9g02519 9 47377507 47380080 ECH
Rops10g00966 10 20905886 20911900 Rops9g02519 9 47377507 47380080 PCT