Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02498 ATGTGTCCTCTGACCCGCAAAGACTTGGAAAGGATTTTTGAGAAGGTGGACATGAATGGCGATGGATTTTTAACCCTTGAGGAGCTGAACGGTTTGCTAGAGAAGACAGGGTTCAATTTCAGCTTAGAGGAGTTGGAATCTCTAGTTGGAAAGAAGAGCCTTGACTTCATTGAGTTCTTGTTCTTTTATGAGACCATGTTGAAGCAAGACAATGAGGAGGGAAAAGAGGGTGATGATGAGATTGAGGACATAGAGAGTGACCTTGTGAAGGCTTTCAAGGTGTTTGATTTGGATGGAGATGGATTCATCACTGATGAAGAGCTGGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGAAAGGAGTGGTAAGGATTGCAGAACCATGATTTACTCCTATGACACTAATTTGGATGGCAAGCTTGATTTCCAGGAATTTAAGAACATGATGCTGCTAACAACTTCATGA 468 0.4274 MCPLTRKDLERIFEKVDMNGDGFLTLEELNGLLEKTGFNFSLEELESLVGKKSLDFIEFLFFYETMLKQDNEEGKEGDDEIEDIESDLVKAFKVFDLDGDGFITDEELECVLKRLGMWDERSGKDCRTMIYSYDTNLDGKLDFQEFKNMMLLTTS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02498 155 Gene3D - 76 154 - -
Rops9g02498 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Rops9g02498 155 Gene3D - 5 70 - -
Rops9g02498 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Rops9g02498 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 73 150 - -
Rops9g02498 155 FunFam Calmodulin A 4 153 - -
Rops9g02498 155 SUPERFAMILY EF-hand 5 152 IPR011992 -
Rops9g02498 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Rops9g02498 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Rops9g02498 155 Pfam EF-hand domain pair 86 150 IPR002048 GO:0005509
Rops9g02498 155 CDD EFh 87 150 IPR002048 GO:0005509
Rops9g02498 155 SMART efh_1 87 115 IPR002048 GO:0005509
Rops9g02498 155 SMART efh_1 125 153 IPR002048 GO:0005509
Rops9g02498 155 SMART efh_1 8 36 IPR002048 GO:0005509
Rops9g02498 155 Pfam EF hand 8 35 IPR002048 GO:0005509
Rops9g02498 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02498 Rops-Chr9 46761560 46762151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02498 4 151 EF-hand Containing Proteins AT1G21550 46.667 6.21e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02498 K13448 - gmx:100500561 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02498 9 46761560 46762151 Rops9g02498 9 46761560 46762151 ECH
Rops9g02498 9 46761560 46762151 Rops10g01957 10 35724784 35725668 PCT