Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01957 ATGTTTTTTGCCAATATGTCTCTGCTATCCCCCATTGACTTGCAGCGGATTTTTGAGAAGCTGGACAAGAATGGCGATGGCTTTGTGAGCCTTGATGAACTCAACTGGCTTCTCCAGAAGATAGGTAATTCCCAGTTTAGTTTAGAAGAGCTGGAATCTCTGGTTGAAAAGAAAAGCCTCGATTTCAGCGAGTTCTTGTTCTTTTACAACTCCATATCAAAGCAGAACAATGGAGAGAGCATAGGGGGTGATGTTGATGATGATGATGACATAAAGAAAGAGTTGGAGAGTGACCTTGTGAAGACCTTCAAGGTGTTTGATTTGGACGGAGATGGATTCATCACCAGCCAAGAGCTTGAATGTGTTTTGAAGAGACTTGGCTTGTGGGAAGAAACAAATGGCAAGGATTGCAGAAGCATGATTCGTTTCTATGACACCAATTTGGATGGCCAACTTGATTTCGAGGAATTCAAAAACATGATGTTACTTACCACTGCATGA 501 0.4192 MFFANMSLLSPIDLQRIFEKLDKNGDGFVSLDELNWLLQKIGNSQFSLEELESLVEKKSLDFSEFLFFYNSISKQNNGESIGGDVDDDDDIKKELESDLVKTFKVFDLDGDGFITSQELECVLKRLGLWEETNGKDCRSMIRFYDTNLDGQLDFEEFKNMMLLTTA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01957 166 CDD EFh 98 161 IPR002048 GO:0005509
Rops10g01957 166 SUPERFAMILY EF-hand 13 162 IPR011992 -
Rops10g01957 166 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Rops10g01957 166 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Rops10g01957 166 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Rops10g01957 166 SMART efh_1 13 41 IPR002048 GO:0005509
Rops10g01957 166 SMART efh_1 136 164 IPR002048 GO:0005509
Rops10g01957 166 SMART efh_1 98 126 IPR002048 GO:0005509
Rops10g01957 166 Gene3D - 87 165 - -
Rops10g01957 166 Pfam EF hand 13 40 IPR002048 GO:0005509
Rops10g01957 166 Gene3D - 2 80 - -
Rops10g01957 166 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Rops10g01957 166 ProSiteProfiles EF-hand calcium-binding domain profile. 132 166 IPR002048 GO:0005509
Rops10g01957 166 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 60 161 - -
Rops10g01957 166 FunFam Probable calcium-binding protein CML44 10 72 - -
Rops10g01957 166 FunFam Probable calcium-binding protein CML44 73 164 - -
Rops10g01957 166 Pfam EF-hand domain pair 98 161 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01957 Rops-Chr10 35724784 35725668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01957 7 162 EF-hand Containing Proteins AT1G21550 47.436 2.80e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01957 K13448 - gmx:100527117 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01957 10 35724784 35725668 Rops10g01957 10 35724784 35725668 ECH
Rops9g02498 9 46761560 46762151 Rops10g01957 10 35724784 35725668 PCT