Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01996 ATGAAGATAACGATTAATGGCACAAAAACCAAATCAAAGAAAACAAAACGAAAAAGGCAAAAAGAAAGGGAAAGGCTTTGGCTTCGTTTCTCTTCTCCAAGCTACAGTGCTGGGGAAGTTGATTTTTTTTTTTGTTGGACTGAAATTGAAATGGTTGGCAAGGATAATCTGAGGACTGAGGACTTGAACTTGTGCTTTGAGAAGCTTATGATGGTTGCTAACAGTGGGAAAGGAGGGAGCATGAAGGCAGGGGTCATCACTGAATGGAAGGATATCCCTGTGGAGCTTTTGGTGCAAATTTTGTCACTTGTGGATGATCAGACGGTGATCACAGCTTCTGGTGTTTGTCGTGGCTGGAGAGATTCAATTTATTTTGGTCTTGCCCGTTTATCACTCTCATGGTGTGGCAAGAACATGAATAACTTGGTCCTATCTCTTGTTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACATGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAATTGCTGTCATGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGGTCACTGTATGCTATAGCCCATGGTTGCCGTGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAAAACAGCATCTGATACTGCATTACAGGCTATTGGACACTACTGTAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGATAATGTTGGTGATGTTGGAGTGATGAGTTTGGCATACGGGTGTCCTGATCTTATAACAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCAAACAGATGCCCTCATCTTAGGTCCCTTGGATTGTACTACTGCAAAAACATCACAGACAGAGCAATGTATTCCTTGGCACAAAGCAAAGTGAATAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGAAGAAGATGGGCTAAGGACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTTCAAGCTGTGTGTGACTCATTCCCTGCTCTTCACACATGCTCAGGGAGGCATTCACTCATCATGAGTGGCTGTCTCAATTTGACATCTGTGCATTGTGCATGTGCTGTCCATGCACACCGTGCATTCACCACTTTCCCTCATCCAGCTCATTGA 1257 0.4304 MKITINGTKTKSKKTKRKRQKERERLWLRFSSPSYSAGEVDFFFCWTEIEMVGKDNLRTEDLNLCFEKLMMVANSGKGGSMKAGVITEWKDIPVELLVQILSLVDDQTVITASGVCRGWRDSIYFGLARLSLSWCGKNMNNLVLSLVPKFTKLQTLILRQDMPQLEDNAVETIANCCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKTASDTALQAIGHYCNQLQFLNLGWCDNVGDVGVMSLAYGCPDLITVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAQSKVNNRMWGSVKGGNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTTFPHPAH* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01996 418 Gene3D - 86 128 - -
Rops10g01996 418 Gene3D Ribonuclease Inhibitor 129 342 IPR032675 -
Rops10g01996 418 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g01996 418 PANTHER UNCHARACTERIZED 280 397 - -
Rops10g01996 418 SMART LRR_CC_2 229 255 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 349 374 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 150 176 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 256 281 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 282 307 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 203 228 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 177 202 IPR006553 -
Rops10g01996 418 SMART LRR_CC_2 308 333 IPR006553 -
Rops10g01996 418 Pfam Leucine Rich repeat 308 331 IPR001611 GO:0005515
Rops10g01996 418 Pfam Leucine Rich repeat 256 279 IPR001611 GO:0005515
Rops10g01996 418 CDD F-box_AtSKP2-like 88 135 - -
Rops10g01996 418 SUPERFAMILY RNI-like 126 332 - -
Rops10g01996 418 FunFam F-box protein SKP2B 124 342 - -
Rops10g01996 418 Pfam F-box-like 90 123 IPR001810 GO:0005515
Rops10g01996 418 SUPERFAMILY F-box domain 89 124 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01996 Rops-Chr10 36402115 36406126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01996 K03875 - gmx:100818928 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01996 10 36402115 36406126 Rops10g01996 10 36402115 36406126 ECH
Rops9g02462 9 45737791 45741675 Rops10g01996 10 36402115 36406126 PCT