Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01929 ATGTCTCTCTTTTCCACTCTCAGGAGATCATCCTCACCCTGCATCACCCAACACCTTCCAATCCAACGGTTCTTGATTCGCCATTCTTCAACCTCTTCTTCTTCTTCTCCTACGCTCAACACCACCACCAACCCAGTTTTCGGGTTCACTCGGCAATTAGTTTCGGCCCTCGTGGCTGGCACGAGTTTAGGGCTTCTTCTTTATTCCGAGTTTGACTCAGCTTTCGTTCAAAGCTCACTCTCTTCTTTCGCTGACTGTTCAGTATCGATTTCTGAGGACCAAAAACGATGTCGTTCTTCTCCCTCCTTCTTTAGAAAATTTTCCCTTCCTGAAACTTCTGATCGCTTTATTTTTGGAGATACGTACAGGAGAAGGGTTTTCTTCAACTATGAGAAGCGCATGCGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAATACTTTGCATCTTATCGTACTCCGGAAGGGGAACTACTCATGAAACCAGCAGATCTAATGCGGGCAGTGGTTCCTGTTTTCCCTCCGTCTGAATCCCACCTTGTTAGAGATGGATACTTGATAGGAGAAAGGAGTCCTGGCGATTTACGCTGCCCTCCTTCAGAATTTTTTATGCTTTTTGATATAAACGGGGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCTGTGGCTTTTAAAATGTTTGATGTGGACAATAATGGGGAGATAAATAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCATCACAGGGATGGATTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAAATGGAGGATTGGTGGAATATTTTTTTGGTGCAGATGGAAAGGGATGCCTCCAGCATGATAAATTTGTACAATTTATGAGAGACTTGCATGATGACATTCTGAAACTGGAGTTTGCTCATTATGACTACAAATCTCAAAATTCCATACTAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCTGACATGAGTCATCTAGGCAGGTTGCTTGAACGGGTTGATGAATTGAATAATGATCCACGCTTTAAGGATGTGCGCATCACATTTGAGGACTTCAAAAACTTTGCGGAGCTACGGAAAAAGTTATTTCCATTTTCATTGGCCCTTTTCAGTTTTGGAAAAGTAAATGGCCTGTTAACGAGAGATGATTTTCAACGAGCAGCATCACACGTGTGTGGCATCTCTCTCTCAGACAGTGTGGTGGAGATTGTTTTCCATTTGTTCGACACAAATCAGGACGGAAACCTAAGTTCAGTTGAGTTTGTCAGGGTGCTACACAAGCGAGAAAGAGACATTGTACAACCTGTGCAGACAGGAATCCTGGGTTTGTTGTCTTCCTGCTGGAACTGTACAGATAACATCTCACCCTCACGGTTGTTTTCCTGA 1461 0.4326 MSLFSTLRRSSSPCITQHLPIQRFLIRHSSTSSSSSPTLNTTTNPVFGFTRQLVSALVAGTSLGLLLYSEFDSAFVQSSLSSFADCSVSISEDQKRCRSSPSFFRKFSLPETSDRFIFGDTYRRRVFFNYEKRMRLRSPPEKVFEYFASYRTPEGELLMKPADLMRAVVPVFPPSESHLVRDGYLIGERSPGDLRCPPSEFFMLFDINGDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEINKEEFKKVMALMRSHHRQGVHHRDGLRTGLKVNDSVENGGLVEYFFGADGKGCLQHDKFVQFMRDLHDDILKLEFAHYDYKSQNSILAKDFALSMVASADMSHLGRLLERVDELNNDPRFKDVRITFEDFKNFAELRKKLFPFSLALFSFGKVNGLLTRDDFQRAASHVCGISLSDSVVEIVFHLFDTNQDGNLSSVEFVRVLHKRERDIVQPVQTGILGLLSSCWNCTDNISPSRLFS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01929 486 ProSiteProfiles EF-hand calcium-binding domain profile. 227 262 IPR002048 GO:0005509
Rops9g01929 486 CDD EFh_MICU 232 453 - -
Rops9g01929 486 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Rops9g01929 486 Gene3D - 198 341 - -
Rops9g01929 486 Pfam EF-hand domain pair 202 223 IPR002048 GO:0005509
Rops9g01929 486 Pfam EF-hand domain pair 402 451 IPR002048 GO:0005509
Rops9g01929 486 SUPERFAMILY EF-hand 200 452 IPR011992 -
Rops9g01929 486 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Rops9g01929 486 SUPERFAMILY EF-hand 288 452 IPR011992 -
Rops9g01929 486 Pfam EF hand 235 258 IPR002048 GO:0005509
Rops9g01929 486 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 34 477 IPR039800 GO:0005509|GO:0006851
Rops9g01929 486 ProSitePatterns EF-hand calcium-binding domain. 240 252 IPR018247 -
Rops9g01929 486 CDD EFh 200 257 IPR002048 GO:0005509
Rops9g01929 486 SMART efh_1 197 225 IPR002048 GO:0005509
Rops9g01929 486 SMART efh_1 231 259 IPR002048 GO:0005509
Rops9g01929 486 SMART efh_1 425 453 IPR002048 GO:0005509
Rops9g01929 486 Gene3D - 342 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01929 Rops-Chr9 35361958 35367334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01929 48 418 EF-hand Containing Proteins AT4G32060 65.445 7.64e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01929 K22827 - gmx:100806575 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01929 9 35361958 35367334 Rops10g01381 10 26775876 26778518 PCT