Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01381 ATGGCATCAATGCGATCACATAATAGACAAGGTGCTCACCACAGGGATGGACGACTAAATGTCAATGGTTCTGTAGAAAATGGAGGACTAGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAGACATGATAAATTCGTGCAGTTTATAAGAGATTTACATGATGAAATTCTGAGGCTGGAGTTCGCTCATTATGACTACAAATCTCGAAAATCCATATCGGCCAAGGATTTTGCACACTCTATTGTTGCTTCTGCTGACATGAGTCATCTGGAAAGATTGCTTGAACGGGTTGATGAATTGAACAATGATCCACAGTTTAGGGATGTACGCATCACATTTGAGGAGTTCAAAAATTTTGCTGAGCTTCGGAAAAACTTGTTACAGCTTTCAGTGGCCCTTTTCAGTTTTGCAAAAGTACATGGCCTGTTAACAAGAGATGATTTTCAACATGCTGCATCACATGTTTGCGGTTTATCTCTCTCTGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACTCAAGTGGGGATGGGAACCTAAGTTCAGATGAGTTTGTTAGAGTGCTACACAAGCGAGAAAGAGATATTGCTCAACCTGTGGGGTCAGGAATCCTGGGTTTCTTGTCATGCTGCATGAACTGTACGGATACATTCTCCTCATCGTTGTTTTTCTGA 684 0.4108 MASMRSHNRQGAHHRDGRLNVNGSVENGGLVEYLFGKDGKGRLRHDKFVQFIRDLHDEILRLEFAHYDYKSRKSISAKDFAHSIVASADMSHLERLLERVDELNNDPQFRDVRITFEEFKNFAELRKNLLQLSVALFSFAKVHGLLTRDDFQHAASHVCGLSLSDNVVEIVFHLFDSSGDGNLSSDEFVRVLHKRERDIAQPVGSGILGFLSCCMNCTDTFSSSLFF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01381 227 Gene3D - 29 142 - -
Rops10g01381 227 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g01381 227 Gene3D - 143 201 - -
Rops10g01381 227 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 219 IPR039800 GO:0005509|GO:0006851
Rops10g01381 227 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Rops10g01381 227 ProSitePatterns EF-hand calcium-binding domain. 176 188 IPR018247 -
Rops10g01381 227 Pfam EF-hand domain pair 144 193 IPR002048 GO:0005509
Rops10g01381 227 SUPERFAMILY EF-hand 60 195 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01381 Rops-Chr10 26775876 26778518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01381 1 160 EF-hand Containing Proteins AT4G32060 59.509 1.73e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01381 K22827 - gmx:100786375 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01381 10 26775876 26778518 Rops10g01381 10 26775876 26778518 ECH
Rops9g01929 9 35361958 35367334 Rops10g01381 10 26775876 26778518 PCT