Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01719 ATGGCGACACCGTCGCTGGACGAGGAAACAACGAAGAAAGTGATACGACAGGTGGAGTTTTACTTCAGTGATAGCAACCTTCCCAGGGACAATTTTTTGAGGAAAGCTGTCACTGAAAGTGAAGATGGCATGGTTAGTTTGGCTCTGATTTGTTCCTTTAATCGGATGCGAAAGCATCTTAATCTGGGTGATGCTAAGCCGGATGAGGTGACCCAAGATACTGTAAAAACTGTTGCTCAAGCTTTGAGAAATTCCACTTCACTCAAGATCTCAAAAGATGGGAACAAAGTTGGCAGGACAACTGAACTTCCAAAGCCAGAAGAGGTAATTGAGCAAGTAGAGATAAGAACAATTGCCGCATCACCATTTGAATTTAATGTGAACCTTGAAGATGTGGAGACATTCTTTGGTCAATATGGCAAGGTTAACAGTGTTCGGTTGCCCCGTCACGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTGTTGAGTTCTCATCAGACGAAGAAGTGGAAAAAGTTATGAAGCAAAGATTGATCTATGCGGGGGCTGAGTTAGAATTACAGCCAAAGAAGGACTTTGATGCAGAGAGAGAGAAAGAATTAGAACAGCATGAAAAATTTCGTCATCCTATGGATTCAAATCACCAGAATAACTCAAATACAGAAGCAAACTACCCTAAAGGCTTACTTATAGCCTTCAAACTAAAGGGCATTTCAGATGAAGCTCCTTCAGAAGAGCAAAATAGCACTGATCAACAAGCTAATGATGATAATGGGGTCTCCAAAACAGATCAACAAAATCCCTCTGAAATTGCTGATAAGGAAAGTGATCAAAAGATGTCAGAAGATGAAGACAATGATAAAGAAAACAACGGGTTAAGTGAAGGAAAGGAGACTGAAGGTGAAGCAAAGAGTCAGGAAACTGATGGAAAAATTTCAGCTGCTTCTTACAAGGACAACTCAGATGTTGTCTTACGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTACTGTGAAGTACATAGATTTCAAGATGGGAGAAGAATCAGGATACATTCGGTTTGAAGAACCTGAAGCCGCTCAAAAAGCTCGTGCTTCTGCAGTTCTTTCTGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTGACTGGTGAGGCTGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGAAAAGCACCGAGGAAGTAAGAATAACCATAACCGAGGAAGGGGAGGAAAGCATGGTAAAGGAGGGAAACATATCCGCTCTAGAGAGAATGAATCTGCAGTAGATCGCCCAAATAAAGCTAGAAAGTTATAA 1347 0.4172 MATPSLDEETTKKVIRQVEFYFSDSNLPRDNFLRKAVTESEDGMVSLALICSFNRMRKHLNLGDAKPDEVTQDTVKTVAQALRNSTSLKISKDGNKVGRTTELPKPEEVIEQVEIRTIAASPFEFNVNLEDVETFFGQYGKVNSVRLPRHVGDKRFFCGTALVEFSSDEEVEKVMKQRLIYAGAELELQPKKDFDAEREKELEQHEKFRHPMDSNHQNNSNTEANYPKGLLIAFKLKGISDEAPSEEQNSTDQQANDDNGVSKTDQQNPSEIADKESDQKMSEDEDNDKENNGLSEGKETEGEAKSQETDGKISAASYKDNSDVVLREDLKGVFEKFGTVKYIDFKMGEESGYIRFEEPEAAQKARASAVLSEKGGLVVKNYIATLDPVTGEAEREYWSLLRGNQEKHRGSKNNHNRGRGGKHGKGGKHIRSRENESAVDRPNKARKL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01719 448 CDD LA_like_plant 10 99 - -
Rops9g01719 448 Gene3D - 2 104 IPR036388 -
Rops9g01719 448 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Rops9g01719 448 SMART rrm1_1 117 189 IPR000504 GO:0003723
Rops9g01719 448 SMART rrm1_1 322 380 IPR000504 GO:0003723
Rops9g01719 448 FunFam La protein 2 6 106 - -
Rops9g01719 448 MobiDBLite consensus disorder prediction 412 428 - -
Rops9g01719 448 MobiDBLite consensus disorder prediction 400 448 - -
Rops9g01719 448 PANTHER LUPUS LA PROTEIN-RELATED 10 300 IPR045180 -
Rops9g01719 448 MobiDBLite consensus disorder prediction 243 268 - -
Rops9g01719 448 MobiDBLite consensus disorder prediction 269 308 - -
Rops9g01719 448 Pfam La domain 14 84 IPR006630 -
Rops9g01719 448 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Rops9g01719 448 CDD RRM1_La 117 189 - -
Rops9g01719 448 Gene3D - 109 207 IPR012677 -
Rops9g01719 448 Gene3D - 295 417 IPR012677 -
Rops9g01719 448 ProSiteProfiles xRRM domain profile. 307 428 IPR014886 GO:0003723
Rops9g01719 448 Pfam RNA binding motif 323 419 IPR014886 GO:0003723
Rops9g01719 448 SUPERFAMILY RNA-binding domain, RBD 108 192 IPR035979 GO:0003676
Rops9g01719 448 SUPERFAMILY RNA-binding domain, RBD 327 403 IPR035979 GO:0003676
Rops9g01719 448 SMART la 8 100 IPR006630 -
Rops9g01719 448 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops9g01719 448 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops9g01719 448 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops9g01719 448 MobiDBLite consensus disorder prediction 429 448 - -
Rops9g01719 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 176 IPR000504 GO:0003723
Rops9g01719 448 MobiDBLite consensus disorder prediction 242 314 - -
Rops9g01719 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01719 Rops-Chr9 30149021 30153891 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01719 K11090 - gmx:100786016 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01719 9 30149021 30153891 Rops9g01719 9 30149021 30153891 ECH
Rops9g01719 9 30149021 30153891 Rops10g01551 10 28910038 28914487 PCT