Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01551 ATGGCGACTCCTTCGTTGGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTCTACTTCAGTGATAGCAACCTTTCCACTGATAGTTTTATGAGGAAAACTATCACCGAAAGCGAAGATGGCATGGTTAATTTGGCGTTAATTTGTTCTTTCAATCGAATGCGCAAGCACCTTAATTTGGGTGATATAAAGCCCGATGATGTGACCCAAGATACTGTTGATGCTGTTGCTCAAACTTTGAGAAATTCTACTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGTCAGAAGAGGTGATTGAACAGGTGGAGATAAGAACACTTGCTGCATCACCATTTGAATATGATCTGAAGCTTGAAGACGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCGCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGAGGAAGAAGTAGAAAAAGTTATGAAAAAAGAACTGGTCTTTGCTGGGGCTGAGTTAGAATTAAAACCAAGGAAAGACTTTGATGCTGAGAGAGAGAAAGAAATAGAAGAATATGAAAAATCTCGCCCTTCTATGGGTTCAAATCGCCAGAATAACTCAAATGCAGAAGAAAACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAGTTCCTTCAGAACAAAATGACGTTGATCAACAAGCCAACGACAATAATGTTGACTCCAAAACAGATGAAAAAAATCCTTCTTCAATTAATTCTGGGGAAAGTGACGAAAAGGTGTTAGATAAATTTGACAATGATGAAGAAAACAATGAGATGAAAGAAGGAAAGGAAACTGAAGGTGAAGGTGAAGGTGAAGAAAAGAGTCAAGAAACTGATGGAAAATTTTCCACAGCAGCTTACAAGGACAACATGGATGTTGTCATGCGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAATCAGGATACATCCGATTTGAAGAACCTGAAGCTTCTCAGAGAGCTCGTACTGCTGCAGTTCTTTCAGAAAAGGGTGGCTTGGTGGTAAAGAACTTTGTTGCTACTCTAGATCCAGTATCTGGTGAGGCCGAAAAAGAATACTGGGGCCTGCTTCGTGGTAATCAAGGCAAGCGCCGAGAATTTATGAATAACCGAGGAAGGGGAGGAAGGCATGGTAGAGGGGGCAAACATGCACGCTATAGAGACAATGAATCTGCAGTAAATCGCCCAAATAAAGCTCAGAAAGTTGGTGCTGCATAA 1359 0.4099 MATPSLDEETTKKVIRQVEFYFSDSNLSTDSFMRKTITESEDGMVNLALICSFNRMRKHLNLGDIKPDDVTQDTVDAVAQTLRNSTTLKVSEDGKKVGRTTELPKSEEVIEQVEIRTLAASPFEYDLKLEDVEAFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSEEEVEKVMKKELVFAGAELELKPRKDFDAEREKEIEEYEKSRPSMGSNRQNNSNAEENYPKGLIIAFKLKSISDEVPSEQNDVDQQANDNNVDSKTDEKNPSSINSGESDEKVLDKFDNDEENNEMKEGKETEGEGEGEEKSQETDGKFSTAAYKDNMDVVMREDLKGVFEKFGTVKYIDFKIGAESGYIRFEEPEASQRARTAAVLSEKGGLVVKNFVATLDPVSGEAEKEYWGLLRGNQGKRREFMNNRGRGGRHGRGGKHARYRDNESAVNRPNKAQKVGAA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01551 452 MobiDBLite consensus disorder prediction 276 313 - -
Rops10g01551 452 CDD LA_like_plant 10 99 - -
Rops10g01551 452 PANTHER LUPUS LA PROTEIN-RELATED 10 319 IPR045180 -
Rops10g01551 452 SUPERFAMILY RNA-binding domain, RBD 330 419 IPR035979 GO:0003676
Rops10g01551 452 SMART la 8 100 IPR006630 -
Rops10g01551 452 MobiDBLite consensus disorder prediction 195 224 - -
Rops10g01551 452 FunFam La protein 2 6 106 - -
Rops10g01551 452 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Rops10g01551 452 MobiDBLite consensus disorder prediction 413 452 - -
Rops10g01551 452 Pfam RNA binding motif 328 420 IPR014886 GO:0003723
Rops10g01551 452 Gene3D - 6 108 IPR036388 -
Rops10g01551 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Rops10g01551 452 Pfam La domain 14 84 IPR006630 -
Rops10g01551 452 MobiDBLite consensus disorder prediction 195 210 - -
Rops10g01551 452 MobiDBLite consensus disorder prediction 242 257 - -
Rops10g01551 452 Gene3D - 109 207 IPR012677 -
Rops10g01551 452 SMART rrm1_1 117 189 IPR000504 GO:0003723
Rops10g01551 452 SMART rrm1_1 319 390 IPR000504 GO:0003723
Rops10g01551 452 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops10g01551 452 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops10g01551 452 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Rops10g01551 452 ProSiteProfiles xRRM domain profile. 310 437 IPR014886 GO:0003723
Rops10g01551 452 SUPERFAMILY RNA-binding domain, RBD 109 192 IPR035979 GO:0003676
Rops10g01551 452 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Rops10g01551 452 MobiDBLite consensus disorder prediction 242 317 - -
Rops10g01551 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Rops10g01551 452 Gene3D - 305 420 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01551 Rops-Chr10 28910038 28914487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01551 K11090 - gmx:100786016 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01551 10 28910038 28914487 Rops10g01551 10 28910038 28914487 ECH
Rops9g01719 9 30149021 30153891 Rops10g01551 10 28910038 28914487 PCT