Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01524 ATGTTAATATCACCAGAACAGCAGGCTGCACAGATCAATGAAGTGAGAAGGTTAATAGGGCCACTGTCCGGTAAGGCATCTGTTTATTGTTCTGATGCATCCATCTTAAGGTATTTAAGGGCACGAAATTGGAATGTCAAGAAGGCAGCTAAAATGTTGAAGCAGACCCTAAAATGGAGAGCAGAGTACAAACCAGAAGAGATTCACTGGGAAGATGTTGCTCATGAAGCAGAGACAGGAAAGATCTATAGAGCAAATTATATTGACAAGCATGGGAGAACAGTCCTTGTAATGAGACCTAGTCGCCAGAACTCAAAGTCTACAAAAGGACAAATTAAGTATTTGGTATACTGCATGGAGAATGCTATTATAAATCTTCCGCCAGAACAGGAACAGATGGTCTGGCTGATTGACTTCCAGGGTTTCAATTTGTCACATATATCAATCAAGGTGACACGTGAAACTGCCCATGTATTACAAGAACAATATCCCGAACGGCTGGGTCTGGCGATACTGTACAATCCTCCCAAGCTCTTTGAACCATTCTTCACGATGGTAAAGCCCCTATTAGAGCCTAAGACTTATAATAAAGTCAAGTTCTGTTACTCTGATGATCAGAACACCAAGAAGCTTATAGAGGATTTGTTTGATTTGGACCAACTTGAATCTGCATTTGGTGGGAATGATAACACTGGATTTGACATAAATAAATATGCTGATAGAATGAAAGAGGATGACAAGAAGATTTCCTCTTTCTGGACAAGGGAAAACTCTCCATCCTCAGTTCCAAACATTGCTCCTTCTTTGGATTCAATTAGGTTAGACACAGATTCTGATGCTTCTGACAATGAGAAAATAGAGAAAATAGACTGTTCTCCTGACCCTGAGAAGGATACTGGAGACATTGACTCTAATCAGAAGAATATCTCGGTTAATCAAGGGGATGGAAATGCCAGTGCAGTCATGCATTAG 972 0.4043 MLISPEQQAAQINEVRRLIGPLSGKASVYCSDASILRYLRARNWNVKKAAKMLKQTLKWRAEYKPEEIHWEDVAHEAETGKIYRANYIDKHGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAIINLPPEQEQMVWLIDFQGFNLSHISIKVTRETAHVLQEQYPERLGLAILYNPPKLFEPFFTMVKPLLEPKTYNKVKFCYSDDQNTKKLIEDLFDLDQLESAFGGNDNTGFDINKYADRMKEDDKKISSFWTRENSPSSVPNIAPSLDSIRLDTDSDASDNEKIEKIDCSPDPEKDTGDIDSNQKNISVNQGDGNASAVMH* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01524 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 70 233 IPR001251 -
Rops9g01524 323 Pfam CRAL/TRIO, N-terminal domain 31 54 IPR011074 -
Rops9g01524 323 CDD SEC14 78 228 IPR001251 -
Rops9g01524 323 SMART CRAL_TRIO_N_2 31 56 IPR011074 -
Rops9g01524 323 PANTHER GH16843P 6 259 - -
Rops9g01524 323 FunFam Phosphatidylinositol transfer protein 3 2 262 - -
Rops9g01524 323 Pfam CRAL/TRIO domain 79 227 IPR001251 -
Rops9g01524 323 MobiDBLite consensus disorder prediction 254 323 - -
Rops9g01524 323 SUPERFAMILY CRAL/TRIO domain 70 248 IPR036865 -
Rops9g01524 323 MobiDBLite consensus disorder prediction 275 303 - -
Rops9g01524 323 SMART sec14_4 76 230 IPR001251 -
Rops9g01524 323 PRINTS Cellular retinaldehyde-binding protein signature 150 171 - -
Rops9g01524 323 PRINTS Cellular retinaldehyde-binding protein signature 183 202 - -
Rops9g01524 323 PRINTS Cellular retinaldehyde-binding protein signature 34 56 - -
Rops9g01524 323 SUPERFAMILY CRAL/TRIO N-terminal domain 5 72 IPR036273 -
Rops9g01524 323 Gene3D - 3 258 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01524 Rops-Chr9 25733076 25739441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01524 K26544 - gmx:100780151 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01524 9 25733076 25739441 Rops9g01524 9 25733076 25739441 ECH
Rops9g01524 9 25733076 25739441 Rops10g01809 10 33668447 33670778 PCT