Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01517 ATGGCAGCTAAGGCAAAGAACAACAAAGTGGGGAATGAATTGGGTTGTGGTCTCATGGGGAGAATTCTCAATCTCAAAAGCCACAGATTGAGAAACTCATCTGTTCATTCACTCCCCATGAAGGCTAGCAATGATCATGGCAAAAATGAACCTAAAAAGTCACCAAATGAAGAACCAAAGGTTCCAAGAAGAAGCTCCGCAGATACTACACTCACTGAGTCAAACAAACTGGGTGGAGACCAGAGACAGGGCAGAAAGAGTACCTCTATTCATCATCAAGCACCTTCTACAAACCGAAACAATCAAAATCAGAGGCATTCAGATGCTTCAAGAAGCTCAACATCATCATCATCAAATGGTAGTTCAACAACCCACACAAAGGTTCAACAGAACCATGACACAAATGATGATGACAGGCTACTAAAAGAGCCCACATTGGAACTTGCTAGAATAGGTACTAGTCACCAAAGAGACAATGAGATCATCAAATCCCCAGCAAAAGACTCTCTTACCTTGAAACTCACTGGGAACTTGCTTGTAAATAACACCCCAAGAAGAAAGAGTGTGGAATGCATGCCTAAAATTACAGAGTTGAACTCTGTGCCTGTTTCTTACAATAGTAATGTAAGCAAAGGTATGATGGGGAATATCTTGAGGAAGAATAGCAATGAGCTTGCACAGTTTCTGAGTCAAAGGCACAACAGGGTTATGGACCCTGAGGTGTTAAAGTCCATGGGAAATGAAGCACACAAGAAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACAGAGCAATTGCTCTTGATTCAAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGAAGGTTTCAGGAAGCACTTTTTGAGTGCGAGGAATCTATCAGACTAGACCCTTCATATAACAGAGCCCACAACCGTTTGGCAACAATATATTTCAGATTAGGAGAAGCAGAAAAAGCACTGGATTGCAATAACTCAACCTCATATGCTGATTCGGTACTCCCTTTTCAAGCTCGGGCTCTTCAAAATCACCTTAACAAATGCATTGAAGCTCGGAAAGTAAATGAATGGGGTGTTATACTCAAGGAAACACAATCTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGATCTATGCTTTACAAACTGAAGCCTTGTTGAAGCTCCTAAGATATCAAGAGGCACATGCCATCTATGATAAAATGCCTAAATTTTCACTTGAATGGAGTAACAAGATATTTGGCGTGGCTCGTAGTGCTTACCTGTTGATGATAGGCGCACAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCTGTGACAGCGGCTCAGCAAGCAGCTAAAGTTGATCCAAACAACAGAGAGGTGAATGCAGTAGTAAGGAGAGCCAGAGCAGCAACATCTGCTAGAATGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCTGTATACAATGAAGGACTAGAGCATGATCCACACAATTCAATTCTACTATGCAACAGAGCAGCATGTCGTTCTAAGCTAGGCCAATATGAGAAAGCAATTGAAGATTGTAATGCAGCACTTATGGTTCAGCCATCTTATAGCAAAGCAAGGCTAAGGAGGGCAGATTGCAATGCCAAGCTGGAACGATGGGAAGCTGCTATTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAAGTGGCCAAAGCTTTGTTTGAGGCTCAGCTCCAACTCAAGATGCTACGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGGTTTTTATCTCAAGTAATGATCGGTTCAGACATTATGTAACATCACCTGGGATGGCTGTAGTACTTTTTACCAACAAGGCAACCCACAAGCAAGTGTTGCTGGTTTTGGAGCAAACTAGCAAGAGATTCCCATCAGTTAATTTTCTCAAGGTGGAGATTGAAGACCACCCCTACTTAGCAAAATCAGAAGGTGTGAGCTCTATCCCAGCTTTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAATTTCAGGCAACAACCATGAGTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2115 0.418 MAAKAKNNKVGNELGCGLMGRILNLKSHRLRNSSVHSLPMKASNDHGKNEPKKSPNEEPKVPRRSSADTTLTESNKLGGDQRQGRKSTSIHHQAPSTNRNNQNQRHSDASRSSTSSSSNGSSTTHTKVQQNHDTNDDDRLLKEPTLELARIGTSHQRDNEIIKSPAKDSLTLKLTGNLLVNNTPRRKSVECMPKITELNSVPVSYNSNVSKGMMGNILRKNSNELAQFLSQRHNRVMDPEVLKSMGNEAHKKGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRFQEALFECEESIRLDPSYNRAHNRLATIYFRLGEAEKALDCNNSTSYADSVLPFQARALQNHLNKCIEARKVNEWGVILKETQSAISLGADSAPQIYALQTEALLKLLRYQEAHAIYDKMPKFSLEWSNKIFGVARSAYLLMIGAQVYLAAGRFEDAVTAAQQAAKVDPNNREVNAVVRRARAATSARMSGNLLFKASKFMEACAVYNEGLEHDPHNSILLCNRAACRSKLGQYEKAIEDCNAALMVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVAKALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFTNKATHKQVLLVLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNHELLERSVKLYSS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01517 704 SMART tpr_5 540 573 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 506 539 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 307 340 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 426 459 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 239 272 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 472 505 IPR019734 GO:0005515
Rops9g01517 704 SMART tpr_5 273 306 IPR019734 GO:0005515
Rops9g01517 704 Pfam Tetratricopeptide repeat 433 505 - -
Rops9g01517 704 SUPERFAMILY Thioredoxin-like 589 696 IPR036249 -
Rops9g01517 704 Gene3D Tetratricopeptide repeat domain 238 591 IPR011990 GO:0005515
Rops9g01517 704 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 700 IPR044534 -
Rops9g01517 704 MobiDBLite consensus disorder prediction 65 129 - -
Rops9g01517 704 MobiDBLite consensus disorder prediction 43 64 - -
Rops9g01517 704 Coils Coil 546 566 - -
Rops9g01517 704 MobiDBLite consensus disorder prediction 34 141 - -
Rops9g01517 704 SUPERFAMILY TPR-like 239 461 IPR011990 GO:0005515
Rops9g01517 704 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Rops9g01517 704 Pfam TPR repeat 246 281 - -
Rops9g01517 704 Pfam Thioredoxin 634 695 IPR013766 -
Rops9g01517 704 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Rops9g01517 704 Gene3D Glutaredoxin 599 703 - -
Rops9g01517 704 CDD TRX_family 613 691 - -
Rops9g01517 704 Pfam Tetratricopeptide repeat 508 539 IPR001440 GO:0005515
Rops9g01517 704 SUPERFAMILY TPR-like 476 588 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01517 Rops-Chr9 25537541 25541173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01517 K09527 - gmx:100782846 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01517 9 25537541 25541173 Rops10g01797 10 33440890 33444550 PCT