Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01797 ATGGCAGGGAAAGTCAAGAACAAGGTGGAGGTTGAATTGGGGTGCGGTTTCGTGGGAAGGATTTTCAACCTCAGAAGCAATAAGCTGAGAAACTCATCTGTTCATTCACTACCTATGAAGGCTAGCAACAATGCACAACAGAACGATCAGGGCAAAAACGAAACAAAGCAGCTTCCAAATCATGAAACAAAGGTTCCAAGAAAAAGTAGCTCAACTGAGGCCGTTCCCACACAGAAAGGGGACCAGAATCCACCAAGAAAGAGCACTTCTAGTAATCGTGCATCTTCTGCATACAGAAACAGCCAAAATGGGAGACCTTCAGATGCTGCAAGAAGCTCAATTCAACAGGACTCCAATGATGAGAGCAAGCAACAGAGAGATCCATGTGGTAATTCTCTTGAACTTGCTAGAATAAGTACTGGTCACAAGCGAGACAACGAGAGCAAATCCCCAGCCAAAGAACTAGGTAGTAGTACCTTGAAAATCACTGGGAATTTGCTTGTGAATAACAGCCCCAGAACTAGCGTTAGTGGTACTCCCAAGAATAAAGAGTTGAACTCTATGTCCAGTGCTTACAACAATGCCGGTAAAGGCCTGATGGGGAATATCATGAGGAAGAGCAGTGATGAGCTGGCACAATATCGAAGTCCAAGGAGCAACAGAGTAGACCCTGAGGTGTTGAAGTCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGGAGAGGCTTTGGCTTTGTATGACCGAGCCATTGCTATCGATTCCAACAAGGCAACGTATCATTGCAATAAGAGTGCAGCTTTAATTGGCTTGGGACTGTTGCTGCAGGCCATTGTTGAGTGTGAGGAAGCTATCAGGCTGGAACCTTCATATGGCAGAGCTCATAGCCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAAAAGGCACTAAATTGCAATCAAGCAACCCCATATGCTGATTCTGCACTGGCTTTCCAAGCTCAGACTCTTCAAAATCACCTTAATAAATGCACTGAAGCTAGGAAAGTCAAGGACTGGAAAACTATACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCATCTCCGCAGGTATATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGACATCAAGAAGCATATGCCACCTATGAGAAAATGCCAAAATTTGACCTTGATTGGTGTAACAAATTATTTGGTCCGGCTCGTAGTGCTTACCTTCTAATGACAGGAGCACAAGTTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTGAAAGCATCTCAGCAAGCAGCTAAACTTGATCCAAGCAACAGTGAGGTGAATGCAATGGTAAAGAGGGCCAGAGCAACTGCATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCGTGCGCGGTATACAATGAAGGACTAGAGCATGATCCATACAACTCAGTTCTGCTATGTAACAGGGCAGCATGTCGTTCTAAACTTGGCCAATTCGAGAAAGCAATTGAAGATTGTAATGTAGCCCTTGCAGTCCAGCCTAGTTATAGCAAGGCTAGGTTGAGGAGAGCAGATTGCAATGCCAAGCTGGAACGATGGGAAGCTGCAATTCAAGACTATGAAATGCTACTAAGAGAAAAGCCAGGGGATGAGGAGGTAGCCAGGGCTTTGTTTGAGACCCAGCTACAACTCAAGATGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCTAATTTGGTGTTCATCTCAAGCAATGATCGGTTTAGGCATTATGTAACCTCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAGCAAGTATTGTTGGTGTTGGAGCAAACTTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGATCACCCCTACTTGGCAAAATCAGAAGATGTGAACTGCATCCCAGCATTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGAGTTGCTAGAAAAATCGGTTAAATTATATAGCAGCTGA 2070 0.4415 MAGKVKNKVEVELGCGFVGRIFNLRSNKLRNSSVHSLPMKASNNAQQNDQGKNETKQLPNHETKVPRKSSSTEAVPTQKGDQNPPRKSTSSNRASSAYRNSQNGRPSDAARSSIQQDSNDESKQQRDPCGNSLELARISTGHKRDNESKSPAKELGSSTLKITGNLLVNNSPRTSVSGTPKNKELNSMSSAYNNAGKGLMGNIMRKSSDELAQYRSPRSNRVDPEVLKSMGNEAYKQGRFGEALALYDRAIAIDSNKATYHCNKSAALIGLGLLLQAIVECEEAIRLEPSYGRAHSRLATIYFRLGEAEKALNCNQATPYADSALAFQAQTLQNHLNKCTEARKVKDWKTILKETQSAISLGADSSPQVYALQTEALLKLLRHQEAYATYEKMPKFDLDWCNKLFGPARSAYLLMTGAQVYLAAGRFEDAVKASQQAAKLDPSNSEVNAMVKRARATASARMSGNLLFKASKFMEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALAVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEDVNCIPAFKIYKNGSRVKEIPGNNHELLEKSVKLYSS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01797 689 Pfam Tetratricopeptide repeat 503 558 - -
Rops10g01797 689 Pfam Tetratricopeptide repeat 418 491 - -
Rops10g01797 689 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Rops10g01797 689 SUPERFAMILY TPR-like 463 573 IPR011990 GO:0005515
Rops10g01797 689 Gene3D Glutaredoxin 584 688 - -
Rops10g01797 689 MobiDBLite consensus disorder prediction 38 192 - -
Rops10g01797 689 CDD TRX_family 598 685 - -
Rops10g01797 689 MobiDBLite consensus disorder prediction 38 54 - -
Rops10g01797 689 Gene3D Tetratricopeptide repeat domain 222 576 IPR011990 GO:0005515
Rops10g01797 689 SMART tpr_5 457 490 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 224 257 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 258 291 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 411 444 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 491 524 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 525 558 IPR019734 GO:0005515
Rops10g01797 689 SMART tpr_5 292 324 IPR019734 GO:0005515
Rops10g01797 689 MobiDBLite consensus disorder prediction 69 129 - -
Rops10g01797 689 MobiDBLite consensus disorder prediction 152 192 - -
Rops10g01797 689 SUPERFAMILY Thioredoxin-like 575 684 IPR036249 -
Rops10g01797 689 Pfam Thioredoxin 619 682 IPR013766 -
Rops10g01797 689 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 685 IPR044534 -
Rops10g01797 689 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Rops10g01797 689 SUPERFAMILY TPR-like 224 446 IPR011990 GO:0005515
Rops10g01797 689 Pfam TPR repeat 231 266 - -
Rops10g01797 689 Coils Coil 531 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01797 Rops-Chr10 33440890 33444550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01797 272 568 Glycosyltransferase AT3G04240 22.257 4.53e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01797 K09527 - gmx:100814381 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01797 10 33440890 33444550 Rops10g01797 10 33440890 33444550 ECH
Rops9g01517 9 25537541 25541173 Rops10g01797 10 33440890 33444550 PCT