Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01496 ATGGCCATATTTGGGTGCTTCTCTGTTTTGACTGAAAAGAAGGTGAAAGACAAGGGGAATGAAAAATCTTCAAAAGAGGACTTTAACACTTCACTTGCCAAACTAGCACCCCCGAGAATATCATCAGAGACACGTGATTTGGAGCCAAGCACTTCTGATGTTGCAGTAAAAATTTCAAGGGGCAATTCGAGGGTTATGAGTCTTGAGAGTCCTGTGAAGGATGAAGTAGTAGAGGAAGCTTATGAAGGGGAAGATGAGAATGAAGATGAACCCTTGATCAAGAGGGAACTCTCTGATTTTGATCTCCAAGGCCATGAAGCTGTGGCATGCAAAGAAGGATGTGATCCAACAGAAAGAGAAAGAAAGTATCCCATTGTAAATGGAAACCAAGCCGACAATGATTTGGAAGACAAAAATGATAGTGTTGATATGATCCAAGGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGATTTCTTGGCTTCTCCAAAGCTCAAGCGATCCTGCTCTAACCTTGAAAAAAGAGATGTGCTTAGGCATATAACTCAACACTTGCCTCCTTCAAAGTCACATTCTTTTGAGGACTTTCAGAAATTGTCAGCAAATCCAATGGTTAATCTTGAAAGGTCCAAGTCTGTGATGAGTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGAATTCTTCAAGTCAAGTACTCCCTTCTGGAAGTAAAAAACTATGGTGGAAATTGTTCATGTGGAGCCATAGGAATATACATAGAATGTTCTCTAGAAAATCAACACTAGTTCCTGTTAGTGCTGCTTTACATAGTCAATGTGGGTACTCTTCAGACACCCTTGAACCAAAACAAGGCAAGGCATTGAGACATGTGGAATCGTCTGAGTCAATTGCTACTGAATCCTATTACAAAAGCAACACTGGTAAAAATATAGATAATCAAAGGCAGAGCAGATTTCATAATGAGAATTATGCTTTTTGGCCCCAAAACCAATGGTTTGCTTTCTCAACAGAATCATCTTCCTTTGCCAGAGTGGATGCATGGGTGAAAGATCTTGAAATTCAGCAACCACTTCCTGAGGATGATTTTGATGATGAAAATGCCAGAAGAATTGTCTTCCCACCTTCTCCTGATGGTGTTAGATCAATTACTAGAAACACAGCTCTGTTATTAGCCCATCCAAATGCCAATCTTTCAAAGGAAATTTTGAATGCAAATAGTATGGTCCAGTCTCTAAATCCAGCCTCATCTGTTGCTCACATATCCGGTGTTGGTATAAAAGCCATCCCCCTTATTTCACACTTACCCAATCTCCGCTCTGTCAATTTGTCAGGCAATTTCATAGTTCACATCTCACCAGGATTTCTACCAAAGGGTATTCAAACACTTAATTTGTCAAGAAACAAGATCAGCACCCTTGATGGCCTCAGAGAATTGACCCGGTTGCGGGTACTTGACCTTAGTTACAACCGCATCTCAAGAATTGGACAAGGGTTGTCAAGTTGTTCACATATCAAAGAGCTATATCTTGCCGGGAACAAGATAAGTAATGTTGAGGGGCTACACAGGCTATTTAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAACTAGTCGCTAACTACAACTCACTTCAGGCCCTTGACCTACTTGGAAATCCCATTCAAAGTAACATGAGTGATGACCAGATAAGCAAAGCAGTCTGTGGTCTCCTTCCAAAGCTGGTGTACCTGAACAAACAACCCCTCAAGGCACACAGGGCACGTGAAATACTCAATGATAGTGTTGCCAAAGCTGCACTTAGGAACAGCAAGCATATCTCTGGAAGAAGATCACTAAAGAGAGTTGGTCAAGGAGGGTCAAGTTCCACCAGAGGGCATAGAAGCAGTGCAACTGTTGCCCAGAAAAGCAGGAACCGTAGTAGGAGGATTGAGCTGTGTTCCTTTTGA 1977 0.4193 MAIFGCFSVLTEKKVKDKGNEKSSKEDFNTSLAKLAPPRISSETRDLEPSTSDVAVKISRGNSRVMSLESPVKDEVVEEAYEGEDENEDEPLIKRELSDFDLQGHEAVACKEGCDPTERERKYPIVNGNQADNDLEDKNDSVDMIQGGHVSDPGIGKADFLASPKLKRSCSNLEKRDVLRHITQHLPPSKSHSFEDFQKLSANPMVNLERSKSVMSHCSADRVMLKRNSSSQVLPSGSKKLWWKLFMWSHRNIHRMFSRKSTLVPVSAALHSQCGYSSDTLEPKQGKALRHVESSESIATESYYKSNTGKNIDNQRQSRFHNENYAFWPQNQWFAFSTESSSFARVDAWVKDLEIQQPLPEDDFDDENARRIVFPPSPDGVRSITRNTALLLAHPNANLSKEILNANSMVQSLNPASSVAHISGVGIKAIPLISHLPNLRSVNLSGNFIVHISPGFLPKGIQTLNLSRNKISTLDGLRELTRLRVLDLSYNRISRIGQGLSSCSHIKELYLAGNKISNVEGLHRLFKLTVLDLSFNKITTTKALGQLVANYNSLQALDLLGNPIQSNMSDDQISKAVCGLLPKLVYLNKQPLKAHRAREILNDSVAKAALRNSKHISGRRSLKRVGQGGSSSTRGHRSSATVAQKSRNRSRRIELCSF* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01496 658 ProSiteProfiles Leucine-rich repeat profile. 505 526 IPR001611 GO:0005515
Rops9g01496 658 SUPERFAMILY Outer arm dynein light chain 1 428 591 - -
Rops9g01496 658 SMART LRR_sd22_2 503 524 - -
Rops9g01496 658 SMART LRR_sd22_2 480 502 - -
Rops9g01496 658 SMART LRR_sd22_2 458 479 - -
Rops9g01496 658 SMART LRR_sd22_2 525 546 - -
Rops9g01496 658 Gene3D Ribonuclease Inhibitor 377 501 IPR032675 -
Rops9g01496 658 MobiDBLite consensus disorder prediction 18 54 - -
Rops9g01496 658 Gene3D Ribonuclease Inhibitor 502 597 IPR032675 -
Rops9g01496 658 Pfam Leucine rich repeat 437 493 IPR001611 GO:0005515
Rops9g01496 658 ProSiteProfiles Leucine-rich repeat profile. 460 481 IPR001611 GO:0005515
Rops9g01496 658 ProSiteProfiles Leucine-rich repeat profile. 527 548 IPR001611 GO:0005515
Rops9g01496 658 MobiDBLite consensus disorder prediction 624 646 - -
Rops9g01496 658 FunFam Outer arm dynein light chain 1 protein 499 597 - -
Rops9g01496 658 PANTHER NISCHARIN RELATED 200 647 - -
Rops9g01496 658 MobiDBLite consensus disorder prediction 121 156 - -
Rops9g01496 658 ProSiteProfiles Leucine-rich repeat profile. 482 504 IPR001611 GO:0005515
Rops9g01496 658 FunFam Outer arm dynein light chain 1 protein 385 498 - -
Rops9g01496 658 SMART LRR_typ_2 436 458 IPR003591 -
Rops9g01496 658 SMART LRR_typ_2 525 547 IPR003591 -
Rops9g01496 658 SMART LRR_typ_2 480 503 IPR003591 -
Rops9g01496 658 Pfam Leucine Rich repeat 502 518 IPR001611 GO:0005515
Rops9g01496 658 Pfam Leucine Rich repeat 527 539 IPR001611 GO:0005515
Rops9g01496 658 MobiDBLite consensus disorder prediction 617 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01496 Rops-Chr9 25140351 25143699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01496 460 569 Receptor kinase-like Gene Family AT4G39400 35.043 6.48e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01496 - - gmx:100810094 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01496 9 25140351 25143699 Rops9g01496 9 25140351 25143699 ECH
Rops9g01496 9 25140351 25143699 Rops10g01781 10 33156399 33160299 PCT