Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01781 ATGGCCATGTGTAGGTGTATCTCTGTTTTGATTGGAAGGAAGGAGAAAAAACAGGGTACTGAACGATCTTCAAAAGGGGTAGTTAAAACTCAACTTGCCAAAGTAGAGCACCCCAGTATATCATCAGAGAGTCGTGATTTGAACCCAGCCACGCCTGATGATACTGTACCCGGTGTTAGTATCCAGAAGAATTCGAGGTGCAATGTGAGGGTTATGAACCTTGAGAGTCCTGTGAAGATCGAAGCAGAGGAAGCTTATGAAGGGGAAGATGAGCATGAAGATTCACCCTCCATCAAGAGGGAACTCTCTGATTTTGATCTCCAAGCCCATGAAGCTGTTGCAAGCGAAGGAGGATATGATCCCGCACATAAAGAGATAAAATACCCCAGTTTATGTGAAAACCAAGCCAACATTCAATTAGAAGACACATACGATAAATACAGTAGAAAGAGTGTTGATATAATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTAACTTCTGGGCTTCTCCAAAGCTCACACGATCTTGCTCTAACCTGGAAAGAAGGGACGTACTTAGGAAGACACCTCTTCACTTTCCATCTTCAAAGTCAGTGTCTTTTGAGGATTTGCAGGAATTATCAGCAAATCAAATGGTTAATATAGAAAGTCCCAGGTCTGCGATGACACACTGCAGTGCTGATAGAGTGATGCTGAGAAGGCATTCATCAAGTCAAGTTCTCCCTTCTGGAAGTAAAAGATTGTGGTGGAAGTTTTTCCTCTGGAGCCACAGGAATATACACAGACCTCAGTTAAGCAAATCAATACAATTACATCCTGTGAGCGCTGCTTTAAATAGTCAATGCGGGTACTCATCAGACACCCTTGAACCAAAACAAGGTAAGGCATTGAGACATGTGGAATCACTCTCACCCACGTCATCTTCTGGGGAGTTCTTTCACAAAAGCTGCAATGATAAAGATACTGATAACCAAAGGCGGAGCAGATTTCATAAAGAAAATTTTGGTTTTTGGCCACAAAACCAATGGGTAGCTTTCTCTCCAGCATCATCCTCCTTTACCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCCACCACCTCCTGAGGATTTTGATGATGACAATATTGGAAGCATTGTCTTCCCACCTTCTCCTGACGTTGGTAGATCAATGGCAAGAAGCACAGCTCAGCTGGTTCGACATCCGGATGTCAATCTTTCCAAGGAGATTTTGAATGCCAATAGCGTGGTTCAATCTCTGAATCCAGCCTCAACTGCAGCTCATATATCGGGTATTGGGATAAAAGCCATCCCAGCTCTTTCACACTTCTCCAGTCTCCGCTCTGTCAATTTGTCAAGCAATTTTATAGTTCACATCACGCCTGGAGTTCTCCCAAAGGGTATTCATACACTTGATTTGTCAAGAAACAAGATCAGCACCATTGAGGGTCTCAGAGAATTAACCCGGTTGCGGGTACTTGACCTAAGTTATAATCGCATCTCAAGGATTGGACAAGGGTTATCAAATTGTACACTAGTCAAAGAACTATATCTTGCGGGAAACAAGATAAGTGATGTAGAGGGGCTACACAGGTTGTTGAAGCTAACAGTCTTGGACTTGAGCTTTAACAAGATCACAACAAAAAAAGCATTAGGCCAGCTTGTAGCTAACTACAACTCGCTTCAGGCATTGAATCTGCTCGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGCTACGCAAAGCAGTTATTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAACCTATCAAGCCTCAAAGGGCACGGGAAGTACTCACTGATAGTGTTGCCAAAGCTGCACTGGGGAACAGCAGCAGGAGCTCCCATAGAAGACCACTAAAGAAAGGTGGCCAAGGAGGTTCAAGTTCCCCCAGTGTGCATAGAACCAGTGCTAGTGTTGCCCAGAAAAGCAGGAAAGGGTCAAGGAGCCGAACTAAACATCATTAG 2010 0.4403 MAMCRCISVLIGRKEKKQGTERSSKGVVKTQLAKVEHPSISSESRDLNPATPDDTVPGVSIQKNSRCNVRVMNLESPVKIEAEEAYEGEDEHEDSPSIKRELSDFDLQAHEAVASEGGYDPAHKEIKYPSLCENQANIQLEDTYDKYSRKSVDIIQSGHVSDPGIGKANFWASPKLTRSCSNLERRDVLRKTPLHFPSSKSVSFEDLQELSANQMVNIESPRSAMTHCSADRVMLRRHSSSQVLPSGSKRLWWKFFLWSHRNIHRPQLSKSIQLHPVSAALNSQCGYSSDTLEPKQGKALRHVESLSPTSSSGEFFHKSCNDKDTDNQRRSRFHKENFGFWPQNQWVAFSPASSSFTRVDEWVKDLEIQPPPPEDFDDDNIGSIVFPPSPDVGRSMARSTAQLVRHPDVNLSKEILNANSVVQSLNPASTAAHISGIGIKAIPALSHFSSLRSVNLSSNFIVHITPGVLPKGIHTLDLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTKKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKAVIGLLPKLVYLNKQPIKPQRAREVLTDSVAKAALGNSSRSSHRRPLKKGGQGGSSSPSVHRTSASVAQKSRKGSRSRTKHH* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01781 669 Gene3D Ribonuclease Inhibitor 513 610 IPR032675 -
Rops10g01781 669 FunFam Outer arm dynein light chain 1 protein 511 609 - -
Rops10g01781 669 SUPERFAMILY Outer arm dynein light chain 1 439 607 - -
Rops10g01781 669 Gene3D Ribonuclease Inhibitor 406 512 IPR032675 -
Rops10g01781 669 MobiDBLite consensus disorder prediction 35 60 - -
Rops10g01781 669 SMART LRR_typ_2 537 559 IPR003591 -
Rops10g01781 669 SMART LRR_typ_2 492 515 IPR003591 -
Rops10g01781 669 SMART LRR_typ_2 448 471 IPR003591 -
Rops10g01781 669 MobiDBLite consensus disorder prediction 17 60 - -
Rops10g01781 669 ProSiteProfiles Leucine-rich repeat profile. 517 538 IPR001611 GO:0005515
Rops10g01781 669 PANTHER NISCHARIN RELATED 201 664 - -
Rops10g01781 669 Pfam Leucine rich repeat 450 505 IPR001611 GO:0005515
Rops10g01781 669 Pfam Leucine Rich repeat 539 552 IPR001611 GO:0005515
Rops10g01781 669 ProSiteProfiles Leucine-rich repeat profile. 539 560 IPR001611 GO:0005515
Rops10g01781 669 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Rops10g01781 669 FunFam Outer arm dynein light chain 1 protein 397 510 - -
Rops10g01781 669 MobiDBLite consensus disorder prediction 621 669 - -
Rops10g01781 669 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Rops10g01781 669 MobiDBLite consensus disorder prediction 639 659 - -
Rops10g01781 669 SMART LRR_sd22_2 515 536 - -
Rops10g01781 669 SMART LRR_sd22_2 537 558 - -
Rops10g01781 669 SMART LRR_sd22_2 470 491 - -
Rops10g01781 669 SMART LRR_sd22_2 492 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01781 Rops-Chr10 33156399 33160299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01781 443 604 Receptor kinase-like Gene Family AT5G56040 32.222 4.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01781 - - gmx:100810094 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01781 10 33156399 33160299 Rops10g01781 10 33156399 33160299 ECH
Rops9g01496 9 25140351 25143699 Rops10g01781 10 33156399 33160299 PCT