Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01335 ATGGGAAGAATTTCAAGGACTGGAAGTTATGCAACTGCCTCTTCAATGCAGGAACAACAACCACCTAGCATTACTTGTACCACTTTTAACATTCTAGCTCCCATATACAAGCGTCTCAACCATGAGGACCAGAGTTGCCGTGAAAGTGACTATAGAGAGTTTTGGTTAGAGAGGAATCAAAGGATATTGGATTGTTTGTTGTATGAGAGATCTTCCATTATTTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAAAGACTTGGTGATGCTGGTTATATTAATTTCAAGCTTGGAAGGACTAACAACCGTGGTGATGGTCTTCTGATAGCTGTGCAAAAGGAATATTTTGAAGTTCTTAATTATAAGGAGTTGCACTTCAATGATTGTGGTGATCGAATAGCTCAATTGTTACATGGTGACTTTGCTTTTCCACTTTCACAATGTCAAAACAGTGGTATTAGGCAGGAAATTCTCATTGTCAACACTCACCTACTATTTCCTCATGATTCAAGTCTTCGCCTTGTAAGACTGCATCAGGTCTACAAAATACTTCAATATGTTGAATCTTATCTGAAAGAGTACCAACTTAAGCCTATGCCAATTATTCTATGCGGTGATTGGAATGGAAGCAAACGGGGATATGTTTACAAGTTCCTGAGGTTTCAGGGGTTTGTATCATCATATGATACTGCACATCAGTACACTGATGCAGATACTCACAAGTGTGTTAGCCACCGCAATCATCTGGGAAATATATGTGATGTTGATTTTATATGGCTTCTAAATCCTGACAAATATCAAAAACTGCTAAAAGCAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGGATCTATTGCGAAGAGCTTATCTGACAGAAAGTGATGCATTTGCTTTTCTAAAGGCTGACAATGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTAGACAGCTTAATTTAATTGGTCATTGCCATGGGTTAAGTGTTAAAGAAACAAAGGACTTGTGGAACCAAGCAGATATAGATGGCAATGGTGTTATTGATAATAAAGAATTTCTGCAGCTAATCTGGAATCCAACAGGGTCAGATCAAAGAGATGACAAGAAGAATGGGCAGCAAGATGATGGACCAAATGATAGTGAGGAGGAACAAACAATTGGATTTAGTGTAAAAAATGCAGTTTTTTTTCCTCCAGAGGTGGAGCAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCAAAACTAACTGTAGTCTTCTCACCAATAAGAATGTCATGCTCCTGA 1317 0.3834 MGRISRTGSYATASSMQEQQPPSITCTTFNILAPIYKRLNHEDQSCRESDYREFWLERNQRILDCLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYINFKLGRTNNRGDGLLIAVQKEYFEVLNYKELHFNDCGDRIAQLLHGDFAFPLSQCQNSGIRQEILIVNTHLLFPHDSSLRLVRLHQVYKILQYVESYLKEYQLKPMPIILCGDWNGSKRGYVYKFLRFQGFVSSYDTAHQYTDADTHKCVSHRNHLGNICDVDFIWLLNPDKYQKLLKASWSEAVFGMFKDLLRRAYLTESDAFAFLKADNEDCITYSGFCEALRQLNLIGHCHGLSVKETKDLWNQADIDGNGVIDNKEFLQLIWNPTGSDQRDDKKNGQQDDGPNDSEEEQTIGFSVKNAVFFPPEVEQGRWPEDYSLSDHAKLTVVFSPIRMSCS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01335 438 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 12 430 - -
Rops9g01335 438 ProSitePatterns EF-hand calcium-binding domain. 349 361 IPR018247 -
Rops9g01335 438 ProSiteProfiles EF-hand calcium-binding domain profile. 336 371 IPR002048 GO:0005509
Rops9g01335 438 MobiDBLite consensus disorder prediction 371 385 - -
Rops9g01335 438 Pfam Endonuclease/Exonuclease/phosphatase family 28 234 IPR005135 GO:0003824
Rops9g01335 438 Gene3D Endonuclease/exonuclease/phosphatase 5 435 IPR036691 -
Rops9g01335 438 SUPERFAMILY EF-hand 302 367 IPR011992 -
Rops9g01335 438 MobiDBLite consensus disorder prediction 368 393 - -
Rops9g01335 438 FunFam Putative calcium-binding protein 9 434 - -
Rops9g01335 438 SUPERFAMILY DNase I-like 16 250 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01335 Rops-Chr9 22073152 22077281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01335 2 330 EF-hand Containing Proteins AT5G54130 74.622 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01335 - - gmx:100792805 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01335 9 22073152 22077281 Rops10g02202 10 39564156 39568667 PCT