Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01104 ATGGCAGAACATCAGAAAATTCATCCAGTTCATGATGTGGAGTCACCACTACACCAACCTTCAGCACCTTTGGTGCCAAGAAACATGTCTAAATCTGATAGGGGTGATCCAGAAAATGTGGTGCGTTCTCCTCCTCCTCCTCCTCCTCAAACCACCTTGCCTGTGATGCATCCCAAGCCACCAAAGAAAAGAAGAAGTTGCTGCTGCAGGTTCATGTGTTGGACACTAAGCATATTGCTGATTCTCATTGTAGCCATTGGCATCACCATTGGGATACTTTACCTTGTGTTTAGACCTAAGCTTCCAAAATACTCAGTGGATAAATTGGGAGTTACCCAGTTTGATCTTTCAAACAACAACAGTTTATCTGTTACTTTCAACTTGACAATCACTGCTAGAAACCCAAACAAGAAGATTGGAATAGATTATAGAGGTGGGAGCCATATAAGTGCTTGGTACAATGACACAAAACTATGTGAAGGGTCTTTGCCTAAATTCTACCAGGGTCACCGCAACATTACAGTGCTTAGCATACCTCTTTCGGGGCAAACACAAAATGCAACTGGCATAAGAGATACAGTGCAACAGCAGCTACAACAAACAGGTAATGTTCCTCTTAATTTGAAGGTGAAACAACCTGTGAGGATTAAGCTTGGGAAGTTGAAGCTGTTCAAAATCAAGTTCAGGGTTAGGTGCAGGATTGTGGTGAATAGCCTTGATGCTAATAATTCTATTAGAATTCAGAGCAGTAGTTGTAAGTTCAGGTTTAGGCTGTGA 777 0.4196 MAEHQKIHPVHDVESPLHQPSAPLVPRNMSKSDRGDPENVVRSPPPPPPQTTLPVMHPKPPKKRRSCCCRFMCWTLSILLILIVAIGITIGILYLVFRPKLPKYSVDKLGVTQFDLSNNNSLSVTFNLTITARNPNKKIGIDYRGGSHISAWYNDTKLCEGSLPKFYQGHRNITVLSIPLSGQTQNATGIRDTVQQQLQQTGNVPLNLKVKQPVRIKLGKLKLFKIKFRVRCRIVVNSLDANNSIRIQSSSCKFRFRL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01104 258 SUPERFAMILY LEA14-like 82 215 - -
Rops9g01104 258 Pfam Late embryogenesis abundant protein 129 233 IPR004864 -
Rops9g01104 258 MobiDBLite consensus disorder prediction 40 56 - -
Rops9g01104 258 MobiDBLite consensus disorder prediction 1 60 - -
Rops9g01104 258 Gene3D - 96 239 - -
Rops9g01104 258 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 36 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01104 Rops-Chr9 18125850 18126626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01104 47 249 EF-hand Containing Proteins AT5G21130 30.542 4.06e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01104 - - gmx:100782663 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01104 9 18125850 18126626 Rops9g01104 9 18125850 18126626 ECH
Rops11g03370 11 64816677 64817411 Rops9g01104 9 18125850 18126626 PCT