Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01018 ATGGCTCTCTGTTCCTTTGTTTCACCATGCATGCTTCTCTTGTCATTCTTTTTCTTAACCTCCTTCTCTGCCAAACTTAACCATAAAAACGACTCACTCTCTTTCCCTCTCACTTGGCTTCCACTCTCCGTAGATAAACCTCTTTCTTCAAACTCGAAGAACAATCCAGAACCAGAACCAAGAACCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCATATAACTTGAAATCCTCTTTCAAATACACCATGGCTCTGGTGGTGACACTCCCCATTGGGACTCCTCCACAGCTTCAACAAATGGTGTTGGACACAGGAAGCCAACTCTCATGGATTCAGTGTCACAACAAGACACCAAAAAAGCCTCCCCCTACGGCGTCGTTTGACCCTTCTCTCTCTTCTTCTTTCTATGTCCTCCCCTGCACCCACCCACTTTGCAAACCCCGTGTTCCCGATTTTACCCTACCCACAACCTGCGACCAGAACCGTCTCTGCCATTACTCTTACTTCTACGCTGACGGCACTTACGCCGAGGGCAATCTCGTCAGAGAAAAACTCACCTTCTCCCCTTCCCAAACTACCCCTCCCCTCATCCTCGGTTGCGCCACCGAATCCAACGACGCCACGGGCATTTTGGGAATGAATCTCGGTCGCTTGTCCTTCCCTTCCCAAGCAAAAATCACGAAATTCTCGTACTGTGTCCCCACCAGACAAACCCGACCCGGTTACGGCTCCTTTTACCTCGGAAACAACCCGGATTCGACCCGTTTTCGTTACGTTAGCTTGTTGACTTTTAAACCAAGTCAACGCATGCCCAACCTGGACCCCTTGGCCTACACAGTCCCAATGCAAGGTATAAGAATCGGTGGCAAGAAGCTGAACATTCTACCCTCCGTTTTCAGGCCCAACGCTGGCGGGTCGGGTCAAACCATAATTGATTCCGGATCCGAATTCACTTTCCTTGTGGACGCGGCTTATGATAGGGTGCGTGAGGAGGTTGTAAGAATGGTGGGACCCAGGATAAAGAAGGGGTACGTGTACGGTGGTGTTGCTGACATGTGTTTTGATGGTAGAGATGCGATTGAGATCGGACGGTTGTTAGGGGACATGGTTTTTGAGTTCGAGAAAGGCGTGGAGATAGTGATTCGGAAAGAGAGGGTACTAGCTGACGTGGGTGGTGGGGTCCATTGCGTGGGAATTGGAAGGTCAGAAAGATTGGGTGCGGCCAGTAACATTATTGGCAACTTCCATCAACAAAATCTATGGGTGGAGTTTGATCTGGCCAATCGTAAAGTTGGTTTCGGTGAAGCTGATTGTAGCAGATCAGCGAAGTAG 1332 0.4917 MALCSFVSPCMLLLSFFFLTSFSAKLNHKNDSLSFPLTWLPLSVDKPLSSNSKNNPEPEPRTLSSSSSSSSSYNLKSSFKYTMALVVTLPIGTPPQLQQMVLDTGSQLSWIQCHNKTPKKPPPTASFDPSLSSSFYVLPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLILGCATESNDATGILGMNLGRLSFPSQAKITKFSYCVPTRQTRPGYGSFYLGNNPDSTRFRYVSLLTFKPSQRMPNLDPLAYTVPMQGIRIGGKKLNILPSVFRPNAGGSGQTIIDSGSEFTFLVDAAYDRVREEVVRMVGPRIKKGYVYGGVADMCFDGRDAIEIGRLLGDMVFEFEKGVEIVIRKERVLADVGGGVHCVGIGRSERLGAASNIIGNFHQQNLWVEFDLANRKVGFGEADCSRSAK* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01018 443 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Rops9g01018 443 Pfam Xylanase inhibitor N-terminal 86 245 IPR032861 -
Rops9g01018 443 Gene3D Acid Proteases 248 443 IPR021109 -
Rops9g01018 443 PANTHER ASPARTYL PROTEASE-RELATED 14 440 IPR001461 GO:0004190|GO:0006508
Rops9g01018 443 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Rops9g01018 443 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Rops9g01018 443 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Rops9g01018 443 Pfam Xylanase inhibitor C-terminal 277 434 IPR032799 -
Rops9g01018 443 MobiDBLite consensus disorder prediction 48 73 - -
Rops9g01018 443 Gene3D Acid Proteases 59 247 IPR021109 -
Rops9g01018 443 ProSiteProfiles Peptidase family A1 domain profile. 85 434 IPR033121 -
Rops9g01018 443 SUPERFAMILY Acid proteases 84 441 IPR021109 -
Rops9g01018 443 CDD pepsin_A_like_plant 86 438 IPR034161 -
Rops9g01018 443 FunFam Aspartyl protease family protein 65 246 - -
Rops9g01018 443 FunFam aspartic proteinase PCS1 248 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01018 Rops-Chr9 16774506 16776293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01018 61 443 Miscellaneous Gene Families AT1G44130 22.300 1.04e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01018 - - gmx:100790706 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01018 9 16774506 16776293 Rops9g01018 9 16774506 16776293 ECH
Rops11g03480 11 66662968 66664575 Rops9g01018 9 16774506 16776293 PCT