Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03480 ATGGCTCTATCACAACGTTGTAACAACATGCTTCTGTTTCTCTTCTTCTTTCTTTTCTCCTCTATCAACCCTTCCTTACAACACAACCACCACAACAACAAAACCAACTCAAACCCACTCTCACTATCTTTTCCTCTTACTTCACTCTCTCTCTCCACCAACACTACCTCAAAAATGCTATATGGGTCTTTGGTTTCAAATTCAAAACACAACCCATTGCTCAAAACACCTTCTTCTTACAACTACAAGTTCTCTTTCAAGTACTCAATGGCTCTCATAGTGTCCCTTCCAATTGGGACACCACCACAGGTTCAACAAATGGTGTTGGACACTGGAAGCCAACTCTCATGGATTCAGTGTCACAAAAAGGTAGCACCAAAGAGACCTCCCCCAACGGCGTCGTTTGACCCTTCTCTCTCTTCAACTTTCTCTATCCTCCCTTGTACTCACCCTGTGTGCAAACCCCGAATTCCCGATTTTACCCTCCCCACTTCCTGTGACCAGAACCGCCTCTGCCACTATTCCTACTTCTACGCTGATGGAACCTACGCCGAGGGCAATCTCGTCAGAGAAAAATTCACCTTTTCACGTTCCCAAATTACCCCTCCCTTAATCCTAGGTTGCGCCACGGAATCCAGCGACGCCAGGGGCATTTTGGGAATGAACCTCGGGCGATTGTCCTTCGCCTCTCAATCCAAAATTACCAAATTCTCCTACTGTGTACCCACCCGAAATACCCGACCCGGATCCTTACCAACCGGGTCGTTTTACCTTGGAAACAACCCGAATTCCCGCGGGTTCAAATTTATCCAAATGATGACCTTTCCCCAGAGTCAACGCATGCCGAACCTTGACCCTTTGGCCTACACCGTCTCCATGCAAGGGATTAGGATCGGCGGGAAGAAACTGAGCATTTCCCCGGCGGTTTTCAGGGCGAATGCTGGAGGGTCGGGTCAAACCATGGTTGATTCCGGATCCGAGTTTTCTTACCTGGCTAATGAGGCTTATGATAAGGTGCGGGAGGAAGTAGTGAGGGTTGTGGGGTCCAGGATGAAAAATGGGTACGTGTACGGTGGAGTTGCTGACATGTGTTTTGATGGTAACCATGCGATCGAGATTGGACGGCTGATAGGGGAGATGGTGTTTGAGTTTGAGAAAGGGGTGGAGATAGTGGTTCCTAAGGAGAGGGTACTCGCTGACGTGGGAGGTGGGGTCCACTGTGTTGGGATTGGAAGCTCAGAGAAATTGGGTGCGGCCAGTAACATTATAGGGAATTTTCATCAGCAAAATCTTTGGGTGGAGTTTGATCTGGCCAATCGTAGAGTTGGTTTTGGTAGAGCTGATTGTAGCAGATTGGCTAAGTAG 1365 0.4835 MALSQRCNNMLLFLFFFLFSSINPSLQHNHHNNKTNSNPLSLSFPLTSLSLSTNTTSKMLYGSLVSNSKHNPLLKTPSSYNYKFSFKYSMALIVSLPIGTPPQVQQMVLDTGSQLSWIQCHKKVAPKRPPPTASFDPSLSSTFSILPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSQITPPLILGCATESSDARGILGMNLGRLSFASQSKITKFSYCVPTRNTRPGSLPTGSFYLGNNPNSRGFKFIQMMTFPQSQRMPNLDPLAYTVSMQGIRIGGKKLSISPAVFRANAGGSGQTMVDSGSEFSYLANEAYDKVREEVVRVVGSRMKNGYVYGGVADMCFDGNHAIEIGRLIGEMVFEFEKGVEIVVPKERVLADVGGGVHCVGIGSSEKLGAASNIIGNFHQQNLWVEFDLANRRVGFGRADCSRLAK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03480 454 FunFam Aspartyl protease family protein 73 255 - -
Rops11g03480 454 Gene3D Acid Proteases 67 254 IPR021109 -
Rops11g03480 454 Pfam Xylanase inhibitor N-terminal 93 251 IPR032861 -
Rops11g03480 454 ProSiteProfiles Peptidase family A1 domain profile. 92 445 IPR033121 -
Rops11g03480 454 CDD pepsin_A_like_plant 93 449 IPR034161 -
Rops11g03480 454 PANTHER ASPARTYL PROTEASE-RELATED 12 450 IPR001461 GO:0004190|GO:0006508
Rops11g03480 454 FunFam aspartic proteinase PCS1 259 453 - -
Rops11g03480 454 Pfam Xylanase inhibitor C-terminal 288 445 IPR032799 -
Rops11g03480 454 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 107 118 IPR001969 GO:0004190|GO:0006508
Rops11g03480 454 Gene3D Acid Proteases 256 454 IPR021109 -
Rops11g03480 454 SUPERFAMILY Acid proteases 93 452 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03480 Rops-Chr11 66662968 66664575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03480 94 454 Miscellaneous Gene Families AT1G44130 23.038 5.32e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03480 - - gmx:100806624 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03480 11 66662968 66664575 Rops11g03480 11 66662968 66664575 ECH
Rops11g03480 11 66662968 66664575 Rops9g01018 9 16774506 16776293 PCT