Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00928 ATGAATAATGGCGAGGGAAATGAAGGAGGAACTGAGGCTGAGGTGGCATTGGAAGGCGAACTCCGTAGGGTAGTGTATATGTGGGGTTACCTTCCGGGGGCTCTGCCGCAGAGGACGCCGTTATTGTCGCCGGTTTTCGTTAGGTTTCCGGCGTCATGGAATGATGTTTGCGGCGGTGGTTGTGGATTCGCTATGGCTATCTCTGAGCCGAGGAAGCTCATAACATGGGGCTCAACAGATGATCTAGGCCAAAGTTATGTGACGTCAGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGACTCTATTGTAAAAGCTGCAGCTGGATGGGCTCATTGTGTTGCTGTAACAGAGCATGGAGAAGTTTACACATGGGGATGGAAAGAATGTATTCCTGCTGGGAAGATATTTGGTGACCCTTCTTCAACAGGGGTAAGTGTTGAAAATGATGTGCCAGGAAGGCAGAGGTCATTGTCCACAGAGCAAGTCAGCCCTCGTTCTCAAGGCTCAAGATCTATTGGAGGAGGTACTGCCTCTAATAACAGTAGAGAAGAAAGCACCAAGAGGAGGAGAGTATCTTCAGCAAAGCAACCAGCTGAAAGCTCTTCATCCAATGATGACACTCAGACGGCATTGCCTTGTCTTGTCACACTAAACCCAGGGATAAGAATAGCTAGTGTTGCTGCTGGTGGACGTCATACCCTAGCACTGTCAGATACAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAACTTGGTCTGGGTTCCAGAATACGTATGGTTTCCTCTCCTCATCTTGTTCCTTGCACTGATTCCTTTTCTTATGGTAAAGATAGATCTACAATATTGGCTCGAGGAAGTCTGCATTCAGAGGGACAGCACTTTAGAGCTCCTGGAAGTTATGTAAAGAGAATTGCTTGTGGAGGTAGACACAGTGCAGTGATTACAGATGCTGGAGCTTTGCTTACTTTTGGTTGGGGACTATATGGACAGTGCGGGCAAGGCACTACAGATGATGAACTAAGCCCGACTTGTGTATCTTCCTTATTGGGTATCCAAATAAAGGAAGTTGCTGCGGGACTATGGCATACAGTCTGCACATCTGCTGATGGTGATGTGTATGCTTTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGATCATGCCGAGACTCTACCAAGACTAGTGGATTCTCCGAGCTTGGAAAATATGCATGCAAAGAACATTTCTTGTGGTGCTCGTCACACTGCTTTAATAACAGAGGATGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCTGAAGTCACCATTGAAGGCTACGTCCCTAAAAATGTTGCTTGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACTTGA 1452 0.4828 MNNGEGNEGGTEAEVALEGELRRVVYMWGYLPGALPQRTPLLSPVFVRFPASWNDVCGGGCGFAMAISEPRKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEDSIVKAAAGWAHCVAVTEHGEVYTWGWKECIPAGKIFGDPSSTGVSVENDVPGRQRSLSTEQVSPRSQGSRSIGGGTASNNSREESTKRRRVSSAKQPAESSSSNDDTQTALPCLVTLNPGIRIASVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCTDSFSYGKDRSTILARGSLHSEGQHFRAPGSYVKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIQIKEVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADHAETLPRLVDSPSLENMHAKNISCGARHTALITEDGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGYVPKNVACGWWHTLLLAESPT* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00928 483 Gene3D - 204 288 IPR009091 -
Rops9g00928 483 Pfam Regulator of chromosome condensation (RCC1) repeat 325 372 IPR000408 -
Rops9g00928 483 Pfam Regulator of chromosome condensation (RCC1) repeat 376 427 IPR000408 -
Rops9g00928 483 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Rops9g00928 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 311 321 IPR000408 -
Rops9g00928 483 Gene3D - 15 174 IPR009091 -
Rops9g00928 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 71 123 IPR000408 -
Rops9g00928 483 SUPERFAMILY RCC1/BLIP-II 25 131 IPR009091 -
Rops9g00928 483 MobiDBLite consensus disorder prediction 200 215 - -
Rops9g00928 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 430 IPR000408 -
Rops9g00928 483 PRINTS Chromosome condensation regulator RCC1 signature 426 447 IPR000408 -
Rops9g00928 483 PRINTS Chromosome condensation regulator RCC1 signature 366 384 IPR000408 -
Rops9g00928 483 PRINTS Chromosome condensation regulator RCC1 signature 231 247 IPR000408 -
Rops9g00928 483 PRINTS Chromosome condensation regulator RCC1 signature 107 120 IPR000408 -
Rops9g00928 483 PRINTS Chromosome condensation regulator RCC1 signature 126 142 IPR000408 -
Rops9g00928 483 SUPERFAMILY RCC1/BLIP-II 210 481 IPR009091 -
Rops9g00928 483 Gene3D - 289 482 IPR009091 -
Rops9g00928 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 324 IPR000408 -
Rops9g00928 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Rops9g00928 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 481 IPR000408 -
Rops9g00928 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 417 427 IPR000408 -
Rops9g00928 483 MobiDBLite consensus disorder prediction 143 215 - -
Rops9g00928 483 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 479 - -
Rops9g00928 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 231 241 IPR000408 -
Rops9g00928 483 Pfam Regulator of chromosome condensation (RCC1) repeat 107 131 - -
Rops9g00928 483 Pfam Regulator of chromosome condensation (RCC1) repeat 228 257 - -
Rops9g00928 483 MobiDBLite consensus disorder prediction 146 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00928 Rops-Chr9 15043710 15049648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00928 - - gmx:100807837 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03568 11 68106712 68114572 Rops9g00928 9 15043710 15049648 ECH
Rops9g00928 9 15043710 15049648 Rops9g00928 9 15043710 15049648 ECH
Rops11g03568 11 68106712 68114572 Rops9g00928 9 15043710 15049648 PCT